Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01346 ATGGTTCTTCAAAACGATATTGATTTGTTGAATCCACCTGCTGAACTCGAAAAGAGGAAGCACAAACTCAAACGACTTGTTCCATCCCCTAATTCCTTCTTCATGGATGTCAAGTGCCAAGGTTGCTTTAACATAACAACTGTATTCAGTCACTCCCAAACTGTTGTTGTTTGTGGTAACTGTCAAACGGTGTTGTGCCAACCAACTAGTGGTAAAGTAAGACTTACAGAGGGATGCTCCTTCAGAAAGAAGGGAGATTAG 261 0.4138 MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTSGKVRLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01346 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Trre4g01346 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Trre4g01346 86 FunFam 40S ribosomal protein S27 1 86 - -
Trre4g01346 86 PANTHER 40S RIBOSOMAL PROTEIN S27 1 86 IPR000592 GO:0003735|GO:0005840|GO:0006412
Trre4g01346 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Trre4g01346 86 Gene3D - 5 85 IPR023407 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01346 Trre-Chr4 10387370 10394133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01346 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 93.023 1.42e-57 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01346 K02978 - thj:104816698 169.859