Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01332 ATGGAATCCGGCGACGGTTACGGCGGAAGAAAAGAAACTCAACAACCTTCCGATGAGGTCAGTCTTCAACCAGAATGGAGACGCCGAACTTCCTCCGCCGGAAGAGAACAAAACCTTACTCTCCAACCAGAATGGAGACGAGGTAGTTCAACCGCTTCTCCTTCTCCTTCCGGTGCCGGCGATGAAGTTCAAAAGAAAGAAGAAGAGAATAAAAAGGAGATTCTCTTTCAACCTGAATGGAGAAGCTCAAAGGTGAATGCTAGTAGTGTTTGGGAACCAGAATGGAGACGATCAAGGTCTACTACTACTGCTACTGTTACTGCATATCCATGGAATCAAAATTATGGTGTGAGGAAACCGGTAGGATCGAGTTCTGGTGGTGTTCAAAGAAGTAGAAACATTGATGAATCGCGGCGAAATGATTCACCATTAGATTATGCTGTTCCCAAACTGGAAAGACTGCAAATATCGGACAACTTAGCTACATCATCTTGTTCACTTGAAAAAAAGGATAAAAATTTGCCTATTCGAAGACCTGACAATGGTGGAACGTTAGCGGTTCTTACACGCACACTCCGTGTCAATCATTTTCCTGTTAAGTTCAATCCAGATAGTATAATATTTCATTATAATGTGAATGTCAAATCGAAGTTTTCCTCAAAAGTTGGCCAGCCTCGTAAGTTATCTAATGCTGATCTGTCCGTGATTAGAGAGAAATTATTTTCTGATGATCCTGAGAGGTTTCCCTTGGACATGACTGCACATGACGGCGCAAAAAATATTTTTAGTGCAGTGCAGTTACCAGAAGAGACCATTACTGTGGAGATCTCTGAAGGAGAGGATGAAAAGATCACTTTATATAGTGTTACTCTGACACTTCTTAATAAACTCAGACTTTGCAAGTTAATGGACTATCTTTGTGGGCATTCATTCACTCTTCCCAGGGATATTTTGCAAGGGATGGATGTGGTGATAAAAGAGAATCCCGCTAGGTGCACAATTTCTGTGGGACGATACTTCTATCCCACAAATCCTCCTCTGGTAATGAAGGAACTTCGCCCTGGAGTAATCGCAGTCGGGGGGTATCATCATAGTTTAAAACCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCGGTGGTGCCTTTCCGAAAGCAAATGTCAGTCTTGGATTTCTTGCATGAGCGTATCGAAAACTTTAGCTTGGGTGAATTTGAAAAATTCAGGAAATATGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGCGTGACTCACCGTAAATCCCAACAGAAATATAGCATTGTACGATTAACACCTACAGCTACAAGGTATGTCACTTTCCCCATAGACCATACTAAGGGATGGAAACTTGAAAAGGAAGTCAGTCTTCTTAGCTTTTTTAATGACAAATATGATAAGGACATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGAAACAAGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGCTGAGGGCCAAAGATATCCCAAGGAGCGTTTGGATGGTGTTTCTGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCAAGCGAGAGGCAGGGTGCTATACAGAAGATGGTGCAATCGAGTGACGGACCTTGCGGTGGTGATCATATTCAGAATTTTGGAATGGGAGTTAGCACGACCATGACAACCATTCAAGGACGTGTAATTGGCCCCCCAGAATTGAAGTTGGGTGATCGAAATGGCAAGAATATCAAAATAACAGTGGATCTAGATAAATGTCACTGGAACCTTGCTGGAAGATCAATGGTGGAAGGCAAACCAGTTGAGCATTGGGCCATTCTTGATTTCACCAGTGTTGGGCCGTATAATAAGAAATTAAGACGAAAGGAATTCGTTGAAAAACTTGTTGGTAAATACAAAAAGTTGGGTATCTTTATGCAAGAGCCCATTTGGTACGAAGAATCTTCAATGAAGATACTTACAAGTCATGACATGCTATCTGAATTACTTGAAAAAATCAACAACATTTGTAAATATAGCCAAGGTGGTCTACAATTTCTTCTGTGTGTGATGGCTTATAAAAATCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAGTGACTCAATGTTGTTTGTCTCATAGTGCTAATCAAGGGGATGACAAATTCTATACTTATTTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTAGAGCTCAATAATAGGCTCCCTTACTTTGAGGGTGACGAACATGTTATGTTTATAGGGGCTGATGTCAATCACCCTGGTTTTCGGGACAACAAGAGTCCATCAATTGTTGCTGTGGTTGCAACTGTTAATTGGCCCGCTGCAAATCGTTATGCAGCACGTGTTTGCCCGCAATTCAATCGAAGTGAGAAAATATTAAACTTTGGGGAGATTTGCGTTGAGCTTGTTGGTTGTTATTGGAGGACAAATGGAGTCAGGCCAGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAAGAGCTACTTGATTTGAAGAGAGCATTCCAAAGATTAAATTATTTCCCAACAATCACTCATATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCAGACAGTTGGAGGGACGGGTCTTCCAGTGGCAATATTTTACCGGGAACAGTTATTGACACAAAAGTTACACACCCCTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCCACTCATTACCATGTTTTATGGGATGAACACAAGTTTACATCTGATGAATTGCAGAAACTTATATATGAAATGTGCTTCACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCTGTGTATTATGCCGACCTTGCTGCTTATAGAGGACGATTATACCACGAAGCAAAGATTGGGATGCAACCTAAGAAGTCAAGAGCATCTTCATCTTCTAAAGATTCATCATCGGTTCCACCAACAGCTTCTTTTGAACAGGGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3102 0.4094 MESGDGYGGRKETQQPSDEVSLQPEWRRRTSSAGREQNLTLQPEWRRGSSTASPSPSGAGDEVQKKEEENKKEILFQPEWRSSKVNASSVWEPEWRRSRSTTTATVTAYPWNQNYGVRKPVGSSSGGVQRSRNIDESRRNDSPLDYAVPKLERLQISDNLATSSCSLEKKDKNLPIRRPDNGGTLAVLTRTLRVNHFPVKFNPDSIIFHYNVNVKSKFSSKVGQPRKLSNADLSVIREKLFSDDPERFPLDMTAHDGAKNIFSAVQLPEETITVEISEGEDEKITLYSVTLTLLNKLRLCKLMDYLCGHSFTLPRDILQGMDVVIKENPARCTISVGRYFYPTNPPLVMKELRPGVIAVGGYHHSLKPTSQGLSLCVDYSVVPFRKQMSVLDFLHERIENFSLGEFEKFRKYVEEVLIGLKVSVTHRKSQQKYSIVRLTPTATRYVTFPIDHTKGWKLEKEVSLLSFFNDKYDKDIVYKDIPCLDLGKGNKKNYVPMEFCVLAEGQRYPKERLDGVSAKTLEAMALAHPSERQGAIQKMVQSSDGPCGGDHIQNFGMGVSTTMTTIQGRVIGPPELKLGDRNGKNIKITVDLDKCHWNLAGRSMVEGKPVEHWAILDFTSVGPYNKKLRRKEFVEKLVGKYKKLGIFMQEPIWYEESSMKILTSHDMLSELLEKINNICKYSQGGLQFLLCVMAYKNPGYKYLKWISETKVGIVTQCCLSHSANQGDDKFYTYLALKINAKLGGSNVELNNRLPYFEGDEHVMFIGADVNHPGFRDNKSPSIVAVVATVNWPAANRYAARVCPQFNRSEKILNFGEICVELVGCYWRTNGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKRAFQRLNYFPTITHIVAQKRHQTRFFPDSWRDGSSSGNILPGTVIDTKVTHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEAKIGMQPKKSRASSSSKDSSSVPPTASFEQGFYRLHADLENIMFFI 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01332 1033 Pfam Argonaute linker 1 domain 335 386 IPR014811 -
Trre4g01332 1033 Gene3D paz domain 383 508 - -
Trre4g01332 1033 MobiDBLite consensus disorder prediction 61 75 - -
Trre4g01332 1033 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 191 988 - -
Trre4g01332 1033 SMART DUF1785_2 334 387 IPR014811 -
Trre4g01332 1033 Pfam Piwi domain 689 983 IPR003165 GO:0003676
Trre4g01332 1033 MobiDBLite consensus disorder prediction 114 131 - -
Trre4g01332 1033 CDD PAZ_argonaute_like 388 503 - -
Trre4g01332 1033 Pfam N-terminal domain of argonaute 191 325 IPR032474 -
Trre4g01332 1033 Gene3D - 757 1033 IPR036397 GO:0003676
Trre4g01332 1033 MobiDBLite consensus disorder prediction 132 146 - -
Trre4g01332 1033 Pfam PAZ domain 397 516 IPR003100 GO:0005515
Trre4g01332 1033 CDD Piwi_ago-like 551 985 IPR045246 -
Trre4g01332 1033 SMART Piwi_a_2 688 986 IPR003165 GO:0003676
Trre4g01332 1033 MobiDBLite consensus disorder prediction 33 58 - -
Trre4g01332 1033 MobiDBLite consensus disorder prediction 1 75 - -
Trre4g01332 1033 MobiDBLite consensus disorder prediction 114 146 - -
Trre4g01332 1033 SUPERFAMILY PAZ domain 383 542 IPR036085 GO:0005515
Trre4g01332 1033 SUPERFAMILY Ribonuclease H-like 680 987 IPR012337 -
Trre4g01332 1033 Gene3D - 570 751 - -
Trre4g01332 1033 ProSiteProfiles PAZ domain profile. 388 504 IPR003100 GO:0005515
Trre4g01332 1033 ProSiteProfiles Piwi domain profile. 688 987 IPR003165 GO:0003676
Trre4g01332 1033 SMART PAZ_2_a_3 388 521 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01332 Trre-Chr4 10269668 10274771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01332 192 1006 Eukaryotic Initiation Factors Gene Family AT1G48410 34.571 2.73e-141 449