Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre4g01330 | ATGGAAGATCAAGATTTTTTAGGTTATGAAGCATTTGTTAATGTTGAGGAAGAAGAAGAAGATGAGTTTTGCAGTTGTTGTGAAGATGAAGATGAAGAAGAAAGAGAAGAACAAGATGAAGAAGAATGGAAAGAAACTGAGGAGAAAGTGGTGGAAAATTTGAAGGAAGAACTTGATGAATTTTCAGTGAAAATGTTCTTTAAAGGATTATCAATAACTGGAATTGAAAATTCAACTTCAGGGTTTTCAGGAATTGGAGTGTTCATGGAAAGATCATCAAAATTTTCTCCTATAAGGGTGCAAAAAAGACTTGATTTTTATGCTGAGGAACCTATGGTTGAATACTTAGCACTCATGGATGGTTTACTTGAAGCTTTGCAGAACAAGATCCGTAGAGTTTATGCTTTCACAGATTCTGAGTTGTTGCATAAGATAACATTTGAGAAAAATTCGGACATGCCGCTTTTGATGGCATTGAGAGAAAGGATTCTAGAACATGCCAATAATTTTGAAGCTTTTGATTTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCACTGCAGTTGGCTAAAGTAGCTATGGGACTCGTCACTTTTCCCGTAACTGGCAAAACATCACTTGAGAATTGTTCTATTTGTTGCGACGACAAGCCAGTGCCGATGATGATTAGCTTGAAATGTTCACACACATTCTGTTCACACTGCTTGAGATCCTATACTGACGGTAAGCTACAATGTTGTCAAGTTCCTATAAGATGTCCTCAACCCGGATGCAGATATTGTATCTCTTCACCTGAATGCAAGTCTTTTCTTCCATTCACCTCGTATGAATCTCTGGAGAAATCCCTTTCGGAAGCAAATATAATGCAGTCAGAAAGATTTTATTGTCCGTTTCCGAATTGTTCCGTTCTCCTCGATCCTTGCGAGTGTTTATCGGCAATGGACGGTTCATCCAGTCAGTCAGACAATTCTTGTATCGAGTGTCCTGTTTGTCAGAGGTTTATCTGCGTGGATTGTGGTGTTCCTTGGCATTCTTCCATGACCTGTGTAGAATACCAGAATTTGCCAGAGGAGGAAAGAGATGCTTCTGACATTACATTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTTCTCAAGGTTGTTACCACATGACATGCTGGTAA | 1197 | 0.3926 | MEDQDFLGYEAFVNVEEEEEDEFCSCCEDEDEEEREEQDEEEWKETEEKVVENLKEELDEFSVKMFFKGLSITGIENSTSGFSGIGVFMERSSKFSPIRVQKRLDFYAEEPMVEYLALMDGLLEALQNKIRRVYAFTDSELLHKITFEKNSDMPLLMALRERILEHANNFEAFDLKLIPSIDLEQPLQLAKVAMGLVTFPVTGKTSLENCSICCDDKPVPMMISLKCSHTFCSHCLRSYTDGKLQCCQVPIRCPQPGCRYCISSPECKSFLPFTSYESLEKSLSEANIMQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCQRFICVDCGVPWHSSMTCVEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELSQGCYHMTCW | 398 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre4g01330 | 398 | MobiDBLite | consensus disorder prediction | 18 | 45 | - | - | |
| Trre4g01330 | 398 | SMART | ibrneu5 | 277 | 349 | IPR002867 | GO:0008270 | |
| Trre4g01330 | 398 | SUPERFAMILY | RING/U-box | 206 | 282 | - | - | |
| Trre4g01330 | 398 | ProSitePatterns | Zinc finger RING-type signature. | 227 | 236 | IPR017907 | - | |
| Trre4g01330 | 398 | Pfam | Reverse transcriptase-like | 81 | 179 | IPR002156 | GO:0003676|GO:0004523 | |
| Trre4g01330 | 398 | SUPERFAMILY | RING/U-box | 362 | 397 | - | - | |
| Trre4g01330 | 398 | ProSiteProfiles | TRIAD supradomain profile. | 206 | 398 | IPR044066 | - | |
| Trre4g01330 | 398 | Coils | Coil | 44 | 64 | - | - | |
| Trre4g01330 | 398 | Gene3D | - | 347 | 398 | - | - | |
| Trre4g01330 | 398 | ProSiteProfiles | Zinc finger RING-type profile. | 210 | 254 | IPR001841 | - | |
| Trre4g01330 | 398 | FunFam | RBR-type E3 ubiquitin transferase | 63 | 197 | - | - | |
| Trre4g01330 | 398 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 292 | IPR013083 | - | |
| Trre4g01330 | 398 | Gene3D | - | 40 | 196 | IPR036397 | GO:0003676 | |
| Trre4g01330 | 398 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 49 | 397 | IPR031127 | GO:0004842|GO:0016567 | |
| Trre4g01330 | 398 | Pfam | IBR domain, a half RING-finger domain | 285 | 349 | IPR002867 | GO:0008270 | |
| Trre4g01330 | 398 | CDD | BRcat_RBR_unk | 291 | 352 | - | - | |
| Trre4g01330 | 398 | FunFam | RBR-type E3 ubiquitin transferase | 205 | 290 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre4g01330 | Trre-Chr4 | 10256965 | 10258656 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre4g01330 | 62 | 397 | C3H Transcription Factor Family | AT2G19610 | 25.434 | 4.15e-25 | 104 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre4g01330 | - | - | tpra:123896818 | 723.391 |