Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01310 ATGGACGATATTTCTCCGTGCTGCGATCAAATACCAGATGGAGAAGGCTTTGAGATTCTAAAAGATGAAGATGATGTAGTAATTGAATTAGATTGTCAAAATGATCTTTCTGAAGGAGGAAAGGAATTTCTCCCTCCTGCTGTTGGAATGGAATTTGAGTCATATGATGATGCTTACAATTATTATATTTGTTATGCCAAGGAGGTGGGATTTTGTGTGAGGGTGAAGAATTCATGGTTCAAGAGAAATAGTAGAGAAAAATACGGTGCAGTGCTTTGCTGTAGCAGTCAGGGTTTCAAAAGAATGAAAGATGTTAACAATTTGAGAAAAGATACAAGAACTGGTTGTCCTGCGATGATAAGGATGAGATTAGTGGAGTCACAGAGATGGAGGATACGTGAAGTTACCCTCGAACATAACCACATCTTAGGTGCTAAGATACATAAATCAATTAAAAATATGGGAACTGGAACTAAAAAGAAGTTGTTGCCTAGTTGTTCTAATACTGAGGTGCAAACAGTTAAGTTATATCGTGCACTTGTGATAGATGCGGGAGGTAATTCAAATTCCAACGCAAGAGACGATAAAACTTTCTCTGAATATTTTAATGAGTTGAACCTAAAAAAAGGTGACGCACAAGCTATTTATAATTTCCTTTGCCGTATGCAACTGACTAATCCAAACTTCTTTTATTTAATGGATTTCAACGATGAAGGGCATTTGAGGAATGTATTATGGGTTGATGCCAGGTCCAGGGCTGCATGTGGTTATTTTAGTGATGTTGTTTATTTTGACAACACTTATTTGTCAAACAAATATGAAATTCCTCTTGTGGCTTTTGTTGGACTAAATCACCATGGTCAAACAGTGTTGTTAGGTTGTGGGCTGCTTGCAGGTGAAACGACCGAATCATATACATGGTTGTTTAGAACATGGGTTACGTGTATGTCTGGATGTTCTCCTCAAACTATTATTACAGATAGGTGCAGGGCTTTGCAGAGTGCAATTGCAGAAATTTTTCCGAAATCTCATCATTGTTTTGGCTTGTCATTAATTATGAAAAAAGTACCAGAAAAATTGGGAGGGTTGCCCAATTACGATGCAATCAGGAAAGCATTGATTAAAGCAGTTTATGAGACATTGAAAGTGATTGAATTTGAGGCAGCATGGGGATTTATGATTCAACGTTTTGGAGTTAGCGATCACGAGTGGCTTTGTTCCTTATATGAAGACCGAGTTCATTGGGCACCAGTATATTTAAAGGACAAGTTTTTTGGTGGAATGTCTGCGGCACGCCCTGGTGAGAGTATTAGTCCATTTTTCGATAAATATGTGCACAAACAGACTCCTTTGAAGGAGTTTCTTGACAAGTATGAATTAGCTCTTCATAAGAAGTACAAGGAAGAATCTTTAGCAGATATTGAATCAAGAAACTCAAGCCCCTTGTTGAAAACCAAATGTTCTTTTGAACTGCAGCTTTCTAGAATGTACACAAAAGAAATATTCACGAAGTTCCAATTCGAAGTGGGAGAAATGTTTTCATGTTTTGGTACGACTCAACTACACATGGATGGTCCCATCATAATCTTCTTGGTCAAAGAGCGTGTTTTGATTGATGGAAACAGACGGGAGATTAAGGATTTCGAAGTTTTGTACAGTAGATCAGTAGGTGAAGTTCGTTGTATTTGTTGTTGCTTTAATTTTTATGGATATCTATGTCGACATGCACTGTGCGTACTCAATTTTAATGGGGTGGAAGAGATTCCTCCTAGGTACATTCTTTCACGGTGGAGAAAAGATTACAAACGTCTTTATATTCCTGATCAAAATTTTGGTAGTTCTGATGATACTGATCGTATTCACCGGTGTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTAGAGGAGGGAGTACTTTCTGTAGACCATTACAATGTAGCGTTGCAGGCTTTTGAAGAATCATTTATTAAGGTCCGTGATGTAGAGCAGAGACACGAGTAA 2001 0.3773 MDDISPCCDQIPDGEGFEILKDEDDVVIELDCQNDLSEGGKEFLPPAVGMEFESYDDAYNYYICYAKEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRMKDVNNLRKDTRTGCPAMIRMRLVESQRWRIREVTLEHNHILGAKIHKSIKNMGTGTKKKLLPSCSNTEVQTVKLYRALVIDAGGNSNSNARDDKTFSEYFNELNLKKGDAQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNVLWVDARSRAACGYFSDVVYFDNTYLSNKYEIPLVAFVGLNHHGQTVLLGCGLLAGETTESYTWLFRTWVTCMSGCSPQTIITDRCRALQSAIAEIFPKSHHCFGLSLIMKKVPEKLGGLPNYDAIRKALIKAVYETLKVIEFEAAWGFMIQRFGVSDHEWLCSLYEDRVHWAPVYLKDKFFGGMSAARPGESISPFFDKYVHKQTPLKEFLDKYELALHKKYKEESLADIESRNSSPLLKTKCSFELQLSRMYTKEIFTKFQFEVGEMFSCFGTTQLHMDGPIIIFLVKERVLIDGNRREIKDFEVLYSRSVGEVRCICCCFNFYGYLCRHALCVLNFNGVEEIPPRYILSRWRKDYKRLYIPDQNFGSSDDTDRIHRCNQLFRSALQVVEEGVLSVDHYNVALQAFEESFIKVRDVEQRHE 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01310 666 ProSiteProfiles Zinc finger SWIM-type profile. 548 584 IPR007527 GO:0008270
Trre4g01310 666 SMART 26again6 559 586 IPR006564 GO:0008270
Trre4g01310 666 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
Trre4g01310 666 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 659 IPR031052 GO:0006355
Trre4g01310 666 Pfam SWIM zinc finger 536 580 IPR007527 GO:0008270
Trre4g01310 666 Pfam MULE transposase domain 261 355 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01310 Trre-Chr4 10151247 10153247 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g01310 MULE 3.5e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01310 - K17604 gmx:100796448 1144.03