Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01309 ATGTCAACCGGTGATACCGTGTGTTCTCCAAATCATAAGGACTTGTCTTCGAGCCCTAATCTCGATATCACGATAGATGAAGGATCTCGAAACAGTGAACAACTGCTTGAGGTTGTGGATGAGAGCAATGAGCTTGAGAATGCTTGTAGTCAATTGTTTGGGCTTGATGGAATCGAACATGAAAATGGACGAGATGAAACAACTGTAGTTGACAGTCATAACGGAGAATCTCAAGGAAAAAAAGACTACACCCAACCTGTTGTGGGAATGGAGTTTGAAACTTATGATGATGCCTATAACTATTATAATAGCTATGCCAGGGAGATTGGATTTGCTATTCGGGTCAAATCTTCGTGGGCCAAACGTAACAGTAAAGAGAAGCGTGGTGCTGTCTTGTGCTGTAACTGTGAGGGTTTCAAAACAATTAAAGAAGCTAATAGTCGTAGGAAAGAAACAAGAACCGGCTGTCTAGCAATGGTTAGATTGAGATTAGTGGAATCTAACAGGTGGAGGGTCGATGAGGTCAAGCTTGAGCATAACCATTCATTTGATCCCGAGAGAGCTCAAAACTCTAAATCGCATAAGAGGACAGACAGTGGAACCAAAAGAAAAGTTGAGCCATCTCTTGATGTTGAAGTACGGACAATCAAGTTATATCGACCACCAACTGTAGATGCTTCCGGTTATGGGAGCTCAAATTCTAATGAAGCAGGAACTAGCAACAATGTTAAATTTTCCAGGAGTTTGAAACTTAAAAAAGGCGATGCAAAACTGATTTCAAATTATTTCTGCCACTGTCAACTCACGAGTCCTAATTTTTTCTATGTGATGGATCTAAATGATGATGGACAACTAAGGAACATATTTTGGATTGATTCTAGATCTAGGTCTGCGTTTAATTATTTTGGTGATGTGGTTGCATTTGACTCAACATATTTGTCAAACAATTATGAGATTCCACTTGTTGCATTTGTTGGTGTTAATCACCACGGTCAATCTGTTTTGCTAGGATGTGGTATGCTTTCAGATGAGACATTTGATACATATATTTGGTTATTTAGGGCATGGCTTACTTGTATGTCTGGTCGTCCTCCACAAACTATTGTTACAAACCAATCCAAGACCGTGCGAAGTGCAATAACAGAGGTTTTCCCGAGGGCTCACCATAGAATTTGCCTACTACAAGTCATGCAGAGTATCTGTGGATTTATGGTGCAGTTTCAAGAATACGAGGCATTTCAGATGGCGCTAACAAAAGTCATATACGACCCTAAAACAATAGATGAATTTGAAAGGGATTGGGATGCCCTGATCCATCATTTTGGAATAAGAAATCACGAAAAGCTCCAAACCTTGCATGAGGAACGAGAACACTGGGCACCAGTTTACTCCAAGGACACATTTTTTGCTGGAATATTTGATTATGAAAAGGGTGACTCTGTGGTTCCGTATTTCAAGGGTCACGTGCATCAACAAACTTCTTTGAAAGAATTTTTCGAGATTTATGAATTAGTTCAGCAACAGAAGCAAAAAACTGAAGCTCTTGATGATTTGGAGTCACAAAATTCAAACCCATTACTAAAAACAAATTGCTACTATGAGCTGCAACTCTCGAAATTGTACTCAAATGCAATATTCAGGAAGTTCCAAGACGAGGTGATAATGATGTCTACCTGTTTCTGCGTCTCACAAGTTCAAACAAATGAGTCTATAGTGACATACATGGTAAAAGAACATCAAGGAGAAGAACCAGTCAGAGATGATAGGAATTTTGAAGTCATGTATGATAAAGCGATGGCCGAAGTACGCTGCATTTGTAGTTGCTTTAACTTCAAAGGATACCTATGCAGACATGCCTTGTATATCCTTAATTGCAATGGCGTGGAGGAAATTCCGCGTCAATATATTTTGTCTAGAAGGAGGAAAGATTTTAAGCGATTATATGTACCACATCTCAACTCAGATGATGTTGATATTACCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCTATGCAAGTAGTCGAAGAAGGCACGATATCCCAAAATCATTATATAGTTTCTTGGCAGACATTTAAAGAGTCTTTGAATAAGATTCGCCAGACAAAGATTGAATAA 2124 0.3903 MSTGDTVCSPNHKDLSSSPNLDITIDEGSRNSEQLLEVVDESNELENACSQLFGLDGIEHENGRDETTVVDSHNGESQGKKDYTQPVVGMEFETYDDAYNYYNSYAREIGFAIRVKSSWAKRNSKEKRGAVLCCNCEGFKTIKEANSRRKETRTGCLAMVRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRTDSGTKRKVEPSLDVEVRTIKLYRPPTVDASGYGSSNSNEAGTSNNVKFSRSLKLKKGDAKLISNYFCHCQLTSPNFFYVMDLNDDGQLRNIFWIDSRSRSAFNYFGDVVAFDSTYLSNNYEIPLVAFVGVNHHGQSVLLGCGMLSDETFDTYIWLFRAWLTCMSGRPPQTIVTNQSKTVRSAITEVFPRAHHRICLLQVMQSICGFMVQFQEYEAFQMALTKVIYDPKTIDEFERDWDALIHHFGIRNHEKLQTLHEEREHWAPVYSKDTFFAGIFDYEKGDSVVPYFKGHVHQQTSLKEFFEIYELVQQQKQKTEALDDLESQNSNPLLKTNCYYELQLSKLYSNAIFRKFQDEVIMMSTCFCVSQVQTNESIVTYMVKEHQGEEPVRDDRNFEVMYDKAMAEVRCICSCFNFKGYLCRHALYILNCNGVEEIPRQYILSRRRKDFKRLYVPHLNSDDVDITNPVQCFDHLYKRAMQVVEEGTISQNHYIVSWQTFKESLNKIRQTKIE 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01309 707 Pfam MULE transposase domain 305 398 IPR018289 -
Trre4g01309 707 SMART 26again6 602 629 IPR006564 GO:0008270
Trre4g01309 707 Pfam FAR1 DNA-binding domain 100 184 IPR004330 -
Trre4g01309 707 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 74 702 IPR031052 GO:0006355
Trre4g01309 707 MobiDBLite consensus disorder prediction 181 206 - -
Trre4g01309 707 ProSiteProfiles Zinc finger SWIM-type profile. 591 627 IPR007527 GO:0008270
Trre4g01309 707 Coils Coil 504 524 - -
Trre4g01309 707 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01309 Trre-Chr4 10144973 10148607 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g01309 MULE 1.5e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01309 K17604 - gmx:100796448 1192.18