Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01305 ATGGCAAACCAAAACAGAGAAGAAGAAGAAGAAGAAGAAGTAGTTTGCGTAACCGGAGCAAACGGTTTCATCGGAACATGGCTAGTTAAAACCCTACTTCAAAAACACTACAAAATTCACGCCACAATCTTCCCCAATTCCGATCCATCTCATCTCTTCACACTCCACCCTGAAGCTCAATCCCGAATCACAATTTTCCCTGTCAATATCCTCGACTCCACCGCCGTCTTCTCCGCCATCAATAACTGCTCCGGTGTCTTTCATGTCGCTTCTCCATGTACCCTCGAAGACCCAACCGATCCACAAAAAGAGCTTCTAGAACCTGCTGTACAAGGAACCTTAAATGTTCTAGAAGCATCCAAGCGCGCAGGTGTAAAGCGCGTGGTTCTCACTTCATCGATTTCGGCAATGGTACCAAACCCTAATTGGCCAGAGAAAAAAGCGATCGATGAGGCGTCGTGGACGGATGTTGAGTACTGTAAATTGAGGGGGAAGTGGTATCCGGTGTCAAAGACTGAGGCGGAGAAAGCGGCGTGGGAGTTTCGAGATAAAAATGGTGGTGTTGATGTGGTGGCGGTTCATCCGGGGACTTGTTTGGGGGCGTTGATACAGAAGGAGTTGAATGCGAGTTCGGCGGTTTTACAGAGGTTGATGATGGGGAGTGAGGATACTCAAGAGTGTTATTGGTTAGGTGCTGTTCATGTTAAAGACGTTGCTAGAGCTCATGTTTTGGTTTATGAAACTCCAACTGCTGCTGGTAGATATCTTTGTGTTAATGGGATATATCAGTTTTCTAGTTTTGCTAAAATTGTCTCTGAATTGTATCCTGATTTTCCTATTCACAGTTTTCCAGATGAAACTCAACCTGGTTTGACACCATGTAAAGATGCAGCAAGGAGGCTAATAGACTTGGGCTTAGTCTTCACACCAATTCAAGATGCTATTAGAGAAGCAGCAGAAAGCCTTATGGCTAAAGGCTTCCTGCAGAAAACACCCTCACAGAATTAG 1008 0.4524 MANQNREEEEEEEVVCVTGANGFIGTWLVKTLLQKHYKIHATIFPNSDPSHLFTLHPEAQSRITIFPVNILDSTAVFSAINNCSGVFHVASPCTLEDPTDPQKELLEPAVQGTLNVLEASKRAGVKRVVLTSSISAMVPNPNWPEKKAIDEASWTDVEYCKLRGKWYPVSKTEAEKAAWEFRDKNGGVDVVAVHPGTCLGALIQKELNASSAVLQRLMMGSEDTQECYWLGAVHVKDVARAHVLVYETPTAAGRYLCVNGIYQFSSFAKIVSELYPDFPIHSFPDETQPGLTPCKDAARRLIDLGLVFTPIQDAIREAAESLMAKGFLQKTPSQN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01305 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 321 IPR036291 -
Trre4g01305 335 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 317 - -
Trre4g01305 335 CDD FR_SDR_e 15 306 - -
Trre4g01305 335 Gene3D - 4 335 - -
Trre4g01305 335 FunFam Cinnamoyl-CoA reductase 1 8 335 - -
Trre4g01305 335 Pfam NAD dependent epimerase/dehydratase family 15 251 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01305 Trre-Chr4 10102009 10105282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01305 12 328 Monolignol Biosynthesis Gene Families AT2G02400 63.522 1.16e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01305 - - vra:106775739 515.768