LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g01303	ATGGGTGAAAAATGTCTAGTGTTCCTACTCTTTCTTTTTAGTTATTTGTTGGTTCTTGTGGTAACAAAAACATCATCCAATGATTACAATGCACTTATACTTATAAAGTTTGATTGGAAGAATACGCCACCAAGTTGGGATAACTCGGATGATCCTTGTGGCGGACATTGGGACGGCATTGTGTGCATCAATTCACGCGTTACCGCCATATCATTAGTAAGCATGGATTTGTTTGGCCAGCTTCCATCAGAGATTGGATCATTATCTGAATTGCAGATTTTGGATTTGTCCTACAATAAGAATTTAACAGGACCGCTTCCCGCTGAAATCGGAAACTTGAAAAAGCTGACAAACTTACAGCTTATTAATTGCGGTTTCTTCGGTCCTATCCCAGATACAATAGGAAATCTACCGCGGCTCGTATTCCTATCTTTGAATTCTAATAGATTTAGTGGACCAATTCCAGCTACTATTGGTAATCTCTCGAATCTTTATTGGTTAGACTTAGCAGAAAACCTGCTCGACGGTTCCATTCCAATATCGAATGGAACGACTCCAGGTCTTGATATGCTGCACAAAACGAAACACTTTCATTTTGGGCAGAATAAGCTTTCTGGCGATATTCCAGCTCAACTTTTTAGCTCTAATATGTCTTTGGTACATATACTTTTTGAAAGCAACAAATTTACCGGCAGCATTCCATCTACACTTGGACTTGTACAGAAACTGGAAGTGGTGCGCTTGGATAACAATTCATTAACTGGACCTGTGCCTCAAAACATCAACAATCTTACAAAAGTTAGAGAATTGTTCCTGTCACACAATCGCCTATCCGGTTCCCTACCAAACCTTACTGGAATGAATGTCCTCAGCTACCTGGATTTGAGCAAAAACGCTTTTGATCAATCAGACTTTCCACCATGGTTATCTACTCTACAGTCTCTAACAACAATAATGATGGAGGATATACAACTTCAAGGACCGATTCCTGTTTCTTTGTTCAACCTGGTACAGTTACAGACAGTGATTCTGAAGAACAACCGGCTGAATGGAACTTTAGAAATTGGCTCGACATTTAGTGACCAACTTGGACTCATTGATTTGCAGCTTAATAATATTGAAGATGTTGATTTTGATCCACAATTTAATGTCTCTAACGTGGACCTAATACTAATGAATAATCCAGTTTGCACCAAAACAGGAGTTGTAGAGAATTACTGCACGATTACAAAACCGAATGACACATATACAACTCCGATAGATAACTGTATTCCGGTTGAGTGCAACTCGAATCAGATATTAAGTCCGAAGTGTAAATGTGCATACCCATATACAGGAACTTTAACTCTTAGAGCTCCGTCTTTCTCTGACTTGAGCAACAAGACAGTGTTTGTAATGCTAGAGAAGACTCTGATGGAGTCTTTAATAAGCCATGATAAACCTGTGGACTCGGTTTCATTAAGCAATCCGAGGAAAAGTACCGAACAGTATCTTGATTTGAGTTTAGAAATATTTCCATCAGACGTAGATTCTTTCAATAGAACCGGTATTTCTGGCATAGGCTTTATGCTTAGCAACCAAACATACAAGCCTCCTGGTGATGTTTTCGGACCATTTTATTTCATCGCTGATAAGTATGAACACTATCTTGATGATTCAGTACTAGAAAAAGGTCCTGTGAAATCTAGTAAATCTTCAAATATCGGCATCATAGCTGGAGCCGCTATTGGTGGTTGTTTCCTCGTTGTGTTATTACTCCTTGCAGTTGTTTACGGTTTCCGCCAAAAGAACAAGGCAAGAAGAGCAACTAAGAAAAGTAATCTTTATGAACATTGGGGTCCTGATGAGAGCAGTAGTAGCATCCCACAGTTAAAAGGTGCGAGGCGCTTCACTTTCGAAGAGATTCAAAACTGCACTAAAAAATTCTCACAACTCAATTATATAGGATCTGGAGGTTATGGCAAGGTTTATAGGGGAACTCTTCACAACGGACAACTAGTTGCGGTAAAACGAGCTCAAAATGAATCAATGCAAGGAGGGCTAGAATTCAAAACTGAGATTGAACTTCTATCAAGGGTTCACCATAAAAATCTTGTTAGCCTTATTGGTTTCTGCTTTGAGCAAGGAGAACAAATATTGGTTTATGAGTATGTTGTGAATGGTACTTTGACAGATGCACTTTCAGGAAAATCAGGAATTAGATTGGACTGGATTAGAAGGCTAAAAATAGCTCTTGGTACTGCTAGGGGGTTGGATTATCTTCATGAACAAGCTAATCCTCCTATCATACATAGAGACGTCAAATCGACAAACATTTTACTTGATGAACGCTTGAACGCTAAAGTATCTGATTTTGGTCTCTCCAAGCCTTTGAGTGATGGCGCAAAAGGTTATATGACCACTCAAGTCAAAGGGACAATGGGCTACTTGGATCCAGAATATTACATGACACAACAATTGACCGAAAAGAGTGATGTTTATAGCTTTGGAGTGTTAATGTTAGAGTTGATAACTGCAAGAAGGCCAATAGAAAGAGGGAAATATATTGTGAAAGTGGTCAAGAATTCTCTTGACAAGACAAAAGAATTATATGGTCTTAAGGAAATCATCGATCCTATCATTGATTTCAAGGCATCATTGAACAGTTTTGAAAAATTTATTGATCTTACAATGAAATGTGTTGAAGAATCAAGTTCAAATAGGCCTTCAATGAATCACGCATTTAAAGAAATTGAAAACATGTTACTGTTGGCTGGCACAAACCCGAATGATGTATCAGCATCATCTAGTTATAATGCAAGTGGAAGTTCGATGCATCCTTATGATAATGAGTACTTTGATTCAAGTGTGGTACTTCCGCGTGCGTAA	2868	0.3856	MGEKCLVFLLFLFSYLLVLVVTKTSSNDYNALILIKFDWKNTPPSWDNSDDPCGGHWDGIVCINSRVTAISLVSMDLFGQLPSEIGSLSELQILDLSYNKNLTGPLPAEIGNLKKLTNLQLINCGFFGPIPDTIGNLPRLVFLSLNSNRFSGPIPATIGNLSNLYWLDLAENLLDGSIPISNGTTPGLDMLHKTKHFHFGQNKLSGDIPAQLFSSNMSLVHILFESNKFTGSIPSTLGLVQKLEVVRLDNNSLTGPVPQNINNLTKVRELFLSHNRLSGSLPNLTGMNVLSYLDLSKNAFDQSDFPPWLSTLQSLTTIMMEDIQLQGPIPVSLFNLVQLQTVILKNNRLNGTLEIGSTFSDQLGLIDLQLNNIEDVDFDPQFNVSNVDLILMNNPVCTKTGVVENYCTITKPNDTYTTPIDNCIPVECNSNQILSPKCKCAYPYTGTLTLRAPSFSDLSNKTVFVMLEKTLMESLISHDKPVDSVSLSNPRKSTEQYLDLSLEIFPSDVDSFNRTGISGIGFMLSNQTYKPPGDVFGPFYFIADKYEHYLDDSVLEKGPVKSSKSSNIGIIAGAAIGGCFLVVLLLLAVVYGFRQKNKARRATKKSNLYEHWGPDESSSSIPQLKGARRFTFEEIQNCTKKFSQLNYIGSGGYGKVYRGTLHNGQLVAVKRAQNESMQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQILVYEYVVNGTLTDALSGKSGIRLDWIRRLKIALGTARGLDYLHEQANPPIIHRDVKSTNILLDERLNAKVSDFGLSKPLSDGAKGYMTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVVKNSLDKTKELYGLKEIIDPIIDFKASLNSFEKFIDLTMKCVEESSSNRPSMNHAFKEIENMLLLAGTNPNDVSASSSYNASGSSMHPYDNEYFDSSVVLPRA	955

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g01303	955	Gene3D	Ribonuclease Inhibitor	26	183	IPR032675	-
	Trre4g01303	955	Gene3D	Ribonuclease Inhibitor	184	284	IPR032675	-
	Trre4g01303	955	Pfam	Protein kinase domain	643	909	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g01303	955	ProSiteProfiles	Leucine-rich repeat profile.	266	288	IPR001611	GO:0005515
	Trre4g01303	955	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	762	774	IPR008271	GO:0004672\|GO:0006468
	Trre4g01303	955	SMART	serkin_6	642	917	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g01303	955	Gene3D	Phosphorylase Kinase; domain 1	614	717	-	-
	Trre4g01303	955	Gene3D	Ribonuclease Inhibitor	285	422	IPR032675	-
	Trre4g01303	955	CDD	STKc_IRAK	648	914	-	-
	Trre4g01303	955	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	718	927	-	-
	Trre4g01303	955	FunFam	Leucine-rich repeat family protein	27	183	-	-
	Trre4g01303	955	SUPERFAMILY	L domain-like	61	425	-	-
	Trre4g01303	955	PANTHER	RECEPTOR-LIKE PROTEIN 55	40	914	-	-
	Trre4g01303	955	ProSitePatterns	Protein kinases ATP-binding region signature.	648	670	IPR017441	GO:0005524
	Trre4g01303	955	SUPERFAMILY	Protein kinase-like (PK-like)	613	909	IPR011009	-
	Trre4g01303	955	Gene3D	Transferase(Phosphotransferase) domain 1	718	926	-	-
	Trre4g01303	955	ProSiteProfiles	Protein kinase domain profile.	642	916	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g01303	955	FunFam	Leucine-rich repeat protein kinase family protein	184	283	-	-
	Trre4g01303	955	FunFam	Leucine-rich repeat protein kinase family protein	608	717	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g01303	Trre-Chr4	10093902	10098945	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g01303	8	955	Receptor kinase-like Gene Family	AT5G49760	54.822	0.0	963

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Trre4g01303		Pkinase	1.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g01303	-		-	gmx:100782366	1385.16