Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01295 ATGGATTTTTCAATCGGAGGTGTTCGCGGGTCCCGTGACAATGACATTAACAACGATGAAAGAAGATCTTCTTACAATTGTCTAACGTCTGGTCAAACATCCAAACTTGAAAATTTTATGAAAGAATGCGACCATCCAAATAAGGTCCAGCAACAACAATTGGCTGAGGAGCTTGGGCTTCAGCCCAAGCAAGTCAAATTTTGGTTCCAAAACAAGCGAACATTGTTGAAGAACCAACACGAGAAACAAGACAATAAAAATCTTCGTTTGGAAAACGAAAGACTTCATAATGAAAACCTCTTAATGAAAGAGGCATTGAAGGTCATAAGGTGCGAACCTTGTGGTGGTCCCCCATTTCCGGTGGAAGAGCATGAACATTTCATGCACAAAATGCAACGAGAAAACGCTGAGCTTAAACAAAAGATTGAGAAAACTTCAAAACTTCATACAAGTTTAATGGAAGGAAAAATATCTCGACATATGTTTGAGCATGCTCTGAATTCTATGGAAGTGAGACATAACTCCTAG 528 0.392 MDFSIGGVRGSRDNDINNDERRSSYNCLTSGQTSKLENFMKECDHPNKVQQQQLAEELGLQPKQVKFWFQNKRTLLKNQHEKQDNKNLRLENERLHNENLLMKEALKVIRCEPCGGPPFPVEEHEHFMHKMQRENAELKQKIEKTSKLHTSLMEGKISRHMFEHALNSMEVRHNS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01295 175 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Trre4g01295 175 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Trre4g01295 175 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 159 IPR042160 -
Trre4g01295 175 CDD homeodomain 28 80 IPR001356 GO:0003677
Trre4g01295 175 SMART HOX_1 21 83 IPR001356 GO:0003677
Trre4g01295 175 Gene3D - 9 96 - -
Trre4g01295 175 Pfam Homeodomain 23 77 IPR001356 GO:0003677
Trre4g01295 175 PRINTS Lambda-repressor HTH signature 50 59 IPR000047 GO:0003677
Trre4g01295 175 PRINTS Lambda-repressor HTH signature 59 75 IPR000047 GO:0003677
Trre4g01295 175 Coils Coil 73 105 - -
Trre4g01295 175 Coils Coil 121 148 - -
Trre4g01295 175 MobiDBLite consensus disorder prediction 1 24 - -
Trre4g01295 175 SUPERFAMILY Homeodomain-like 14 83 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01295 Trre-Chr4 10000932 10003545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01295 18 159 Homeobox Transcription Factor Family AT1G73360 44.056 8.86e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre4g01295 Homeodomain 8.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01295 K09338 - mtr:112419334 174.481