Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01293 ATGTTTACTCAGTCTGGTTTCAGTCTTGCACCTAAACCCTTTTTCTCAAATTTTGGTGCAATTGTGACATTTGCTATCTTTGGTACCTTTCTAGCTTCAATGGTAACAGGTGTCTTGGTTTATGTTGGTGGGTTGGTCTTCCTCATGTATAAACTACCTTTTGTTGAGTGCTTGATGTTTGGTGCTCTTATATCAGCAACCGATCCTGTTACTGTTTTGTCCATATTCCAGGAGCTGGGCACAGATGTCAATCTATATGCTTTGGTTTTCGGAGAATCTGTTCTGAATGATGCAATGGCAATTTCTCTGTACAGGACAATGTCATTGGTTAGAAATAACCCATCTGGACAAAATTTCTTCATGGTGGTTGTTAGATTTTTGGAGACTTTTGTTGGGTCTTTGTCTACAGGTGTTGGAGTTGGGTTTACATCTAACCTATTTAAGTATGCAGGCTTGGATATTGACAACCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTCTTCCCTTATTTCTCGTACATGCTGTCCGAAGGCCTTGGTTTGTCCGGTATTGTATCAATATTATTCACAGGAATTGTCATGAAGCACTATGCGTATTCAAATTTGTCACAAAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGAAACATTTATATTTATATACATGGGCTTTGACATTGCTATGGAACAACATAGCTGGTCTCATGTTGGATTTATATTCTTCTCCATTATATTCATTGTAATTGCAAGAGCCGCAAATGTCTTCTCTTGTGCTTACCTGGTCAATCTGGTCAGACCTGCTCATCGAAAGATACCTTCAAAACACCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAGTTCATGATCTTCCAGAAGGACATGGACAGACCATATTCACTGCAACTACAGCAATAGTTGTTTTGACGGTATTGCTGATTGGTGGTTCAACAGGTACCATGCTGGAAGCTCTAGATGTCGTAGGTGGTGACAATCACAGTGATGGCTCTTTGGCTTCAGTTGGTCCCATCACAAATTATGGGGGGAACAATGGTTATGTTGCTCCTTCATATGAGGAGGAGGAGGAAGAATCGTCATCGTCTGGGAACAAAATAAAGATGAAGCTAAAAGAATTCCACAAGAGTGCTGCATCTTTTACGGCATTAGATAGAAACTATCTCACCCCATTCTTTACAAGCCATAATGGAGATGAAGATGAAGAAGCCGAGCCTCTTACTTCTTCGAGATCTTCTTTTACTTCTTCAAGATCAGGATTTCACGGCCAGAGCCCTTATTCATCATGA 1353 0.405 MFTQSGFSLAPKPFFSNFGAIVTFAIFGTFLASMVTGVLVYVGGLVFLMYKLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRNNPSGQNFFMVVVRFLETFVGSLSTGVGVGFTSNLFKYAGLDIDNLQNLESCLFVLFPYFSYMLSEGLGLSGIVSILFTGIVMKHYAYSNLSQSSQRFVSAFFELISSLAETFIFIYMGFDIAMEQHSWSHVGFIFFSIIFIVIARAANVFSCAYLVNLVRPAHRKIPSKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVVGGDNHSDGSLASVGPITNYGGNNGYVAPSYEEEEEESSSSGNKIKMKLKEFHKSAASFTALDRNYLTPFFTSHNGDEDEEAEPLTSSRSSFTSSRSGFHGQSPYSS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01293 450 Gene3D - 54 105 - -
Trre4g01293 450 MobiDBLite consensus disorder prediction 429 450 - -
Trre4g01293 450 MobiDBLite consensus disorder prediction 413 450 - -
Trre4g01293 450 PANTHER SODIUM/HYDROGEN EXCHANGER 3 435 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Trre4g01293 450 NCBIfam sodium/hydrogen exchanger 3 4 348 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre4g01293 450 PRINTS Na+/H+ exchanger signature 6 20 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre4g01293 450 PRINTS Na+/H+ exchanger signature 61 71 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre4g01293 450 PRINTS Na+/H+ exchanger signature 21 29 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre4g01293 450 Pfam Sodium/hydrogen exchanger family 5 339 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01293 Trre-Chr4 9973765 9987485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01293 4 427 Antiporters AT5G55470 30.044 3.64e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01293 K14724 - gmx:100790830 729.939