Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01292 ATGGGCACGGAGAATGAAATTTCTCCGGCCGATGCTCATCGGGCACCTCCCGGGAAAGAACAACAAGCCGCCGGCGTTGGAATCCTTCTTCAGATCATGATGTTAGTTTTATCCTTTGTTCTCGGTCATGTTCTCCGTCGCAAAAAGATTTACATCATTCCTGAAGCCAGTGCTTCTCTTCTCATAGGGTTAATTGTTGGTGTTTTAGCTAATATTTCAGATACTGAAACTAATATCAGGGCTTGGTTCAATTTTCATGAGGAGTTCTTTTTCCTGTTCCTGTTACCTCCGATCATATTTCAGTCTGGTTTCAGTCTTGCACCTAAACCCTTTTTCTCAAATTTTGGTGCAATTGTGACATTTGCTATCTTTGGTACCTTTCTAGCTTCAATGGTAACAGGTGTCTTGGTTTATGTTGGTGGGTTGGTCTTCCTCATGTATAAACTACCTTTTGTTGAGTGCTTGATGTTTGGTGCTCTTATATCAGCAACCGATCCTGTTACTGTTTTGTCCATATTCCAGGAGCTGGGCACAGATGTCAATCTATATGCTTTGGTTTTCGGAGAATCTGTTCTGAATGATGCAATGGCAATTTCTCTGTACAGGACAATGTCATTGGTTAGAAATAACCCATCTGGACAAAATTTCTTCATGGTGGTTGTTAGATTTTTGGAGACTTTTGTTGGGTCTTTGTCTACAGGTGTTGGAGTTGGGTTTACATCTGCTTTGCTATTTAAGTATGCAGGCTTGGATATTGACAACCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTCTTCCCTTATTTCTCGTACATGCTGTCCGAAGGCCTTGGTTTGTCCGGTATTGTATCAATATTATTCACAGGAATTGTCATGAAGCACTATGCGTATTCAAATTTGTCACAAAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGAAACATTTATATTTATATACATGGGCTTTGACATTGCTATGGAACAACATAGCTGGTCTCATGTTGGATTTATATTCTTCTCCATTATATTCATTGTAATTGCAAGAGCCGCAAATGTCTTCTCTTGTGCTTACCTGGTCAATCTGGTCAGACCTGCTCATCGAAAGATACCTTCAAAACACCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAGTTCATGATCTTCCAGAAGGACATGGACAGACCATATTCACTGCAACTACAGCAATAGTTGTTTTGACGGTATTGCTGATTGGTGGTTCAACAGGTACCATGCTGGAAGCTCTAGATGTCGTAGGTGGTGACAATCACAGTGATGGCTCTTTGGCTTCAGTTGGTCCCATCACAAATTATGGGGGGAACAATGGTTATGTTGCTCCTTCATATGAGGAGGAGGAGGAAGAATCGTCATCGTCTGGGAACAAAATAAAGATGAAGCTAAAAGAATTCCACAAGAGTGCTGCATCTTTTACGGCATTAGATAGAAACTATCTCACCCCATTCTTTACAAGCCATAATGGAGATGAAGATGAAGAAGCAGCCGAGCCTCTTACTTCTTCGAGATCTTCTTTTACTTCTTCAAGATCAGGATTTCACGGCCAGAGCCCTTATTCATCATGA 1650 0.4115 MGTENEISPADAHRAPPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKIYIIPEASASLLIGLIVGVLANISDTETNIRAWFNFHEEFFFLFLLPPIIFQSGFSLAPKPFFSNFGAIVTFAIFGTFLASMVTGVLVYVGGLVFLMYKLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRNNPSGQNFFMVVVRFLETFVGSLSTGVGVGFTSALLFKYAGLDIDNLQNLESCLFVLFPYFSYMLSEGLGLSGIVSILFTGIVMKHYAYSNLSQSSQRFVSAFFELISSLAETFIFIYMGFDIAMEQHSWSHVGFIFFSIIFIVIARAANVFSCAYLVNLVRPAHRKIPSKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVVGGDNHSDGSLASVGPITNYGGNNGYVAPSYEEEEEESSSSGNKIKMKLKEFHKSAASFTALDRNYLTPFFTSHNGDEDEEAAEPLTSSRSSFTSSRSGFHGQSPYSS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01292 549 Gene3D - 151 202 - -
Trre4g01292 549 MobiDBLite consensus disorder prediction 511 549 - -
Trre4g01292 549 MobiDBLite consensus disorder prediction 527 549 - -
Trre4g01292 549 PRINTS Na+/H+ exchanger signature 158 168 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre4g01292 549 PRINTS Na+/H+ exchanger signature 103 117 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre4g01292 549 PRINTS Na+/H+ exchanger signature 118 126 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre4g01292 549 PRINTS Na+/H+ exchanger signature 89 100 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre4g01292 549 Pfam Sodium/hydrogen exchanger family 34 437 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre4g01292 549 PANTHER SODIUM/HYDROGEN EXCHANGER 11 535 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Trre4g01292 549 NCBIfam sodium/hydrogen exchanger 3 32 446 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01292 Trre-Chr4 9973765 9988393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01292 21 439 Antiporters AT3G05030 33.182 6.63e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01292 K14724 - gmx:100790830 884.404