Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01276 ATGGATCCTGGCAATGGAGGAAACAGTCTCGGCAACAACTCTAATCTCAACTCAAAACAACGTTTGCGCTGGACACATGAGTTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGAAATACCGACTGGCAAAATACTTACCTGACTCCTCATCTGATGAAGGGAAAAAGGCTGACAAGAAAGAAACGGGGGATACGCTTTCCAATCTAGACGGTTCATCGGGGATGCAGATTACTGAGGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTTCATGAACAATTGGAGGTGCAGAGACAGCTACAACTAAGGATAGAAGCTCAAGGAAAATATTTGAAAAAGATAATTGAAGAGCAACAGCGACTCAGCGGGATTGTTTCAGAAGCACCCGGCTCTGGTGTTGCAGCACCAACTCCAGGAGATATGTGTCAACAAGAACTCGACAATAAGACTGAACCGGCAACCCCCGACCCAGAAAAAGCTGCTAATGAACATGCACCAGCAAAGAGTCTTTCAGTTGAATCTTTCTCATCTCACCACGAACCAATGACACCGGATTCCGGTTGCCAAGTTGGTTCTCCTGCTGACAGCGCTAATGGGGAGCGTTCAACTAAAAAGCAACGAGTAAGCGTGGAAGGAGCGTATTCAAAATCAGACATGGTGCTTCCACATCAGATACTTGAGTCAAGCATACCATCATACCAGCAACAGACCGCTGTTTTCCTTACTCATGATCACTTTAATCCGTCTTTAGGTATGTCTACAAGAAGTGGTGAGGAATTCGACAAGCTTGGTGTCGGGAATATGTGA 903 0.4607 MDPGNGGNSLGNNSNLNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDTLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGIVSEAPGSGVAAPTPGDMCQQELDNKTEPATPDPEKAANEHAPAKSLSVESFSSHHEPMTPDSGCQVGSPADSANGERSTKKQRVSVEGAYSKSDMVLPHQILESSIPSYQQQTAVFLTHDHFNPSLGMSTRSGEEFDKLGVGNM 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01276 300 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Trre4g01276 300 Coils Coil 109 129 - -
Trre4g01276 300 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Trre4g01276 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Trre4g01276 300 FunFam Myb family transcription factor 18 76 - -
Trre4g01276 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 287 IPR044848 GO:0003700
Trre4g01276 300 MobiDBLite consensus disorder prediction 78 96 - -
Trre4g01276 300 Pfam MYB-CC type transfactor, LHEQLE motif 106 152 IPR025756 -
Trre4g01276 300 Gene3D - 18 77 - -
Trre4g01276 300 MobiDBLite consensus disorder prediction 159 242 - -
Trre4g01276 300 MobiDBLite consensus disorder prediction 201 231 - -
Trre4g01276 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
Trre4g01276 300 MobiDBLite consensus disorder prediction 78 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01276 Trre-Chr4 9904817 9906700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01276 54 300 G2-like Transcription Factor Family AT2G01060 59.608 1.90e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre4g01276 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01276 - - gmx:100784511 486.493