Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01275 ATGTATCATCCAACGAATGTTCCTGATTCGAGTTTAATTGGAAGCAATTCATTAGTTCATGGTCAGCACATAGATTCTGGTAGGAGCGCAATGGATCCTGGCAATGGAGGAAACAGTCTCGGCAACAACTCTAATCTCAACTCAAAACAACGTTTGCGCTGGACACATGAGTTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGAAATACCGACTGGCAAAATACTTACCTGACTCCTCATCTGATGAAGGGAAAAAGGCTGACAAGAAAGAAACGGGGGATACGCTTTCCAATCTAGACGGTTCATCGGGGATGCAGATTACTGAGGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTTCATGAACAATTGGAGGTGCAGAGACAGCTACAACTAAGGATAGAAGCTCAAGGAAAATATTTGAAAAAGATAATTGAAGAGCAACAGCGACTCAGCGGGATTGTTTCAGAAGCACCCGGCTCTGGTGTTGCAGCACCAACTCCAGGAGATATGTGTCAACAAGAACTCGACAATAAGACTGAACCGGCAACCCCCGACCCAGAAAAAGCTGCTAATGAACATGCACCAGCAAAGAGTCTTTCAGTTGAATCTTTCTCATCTCACCACGAACCAATGACACCGGATTCCGGTTGCCAAGTTGGTTCTCCTGCTGACAGCGCTAATGGGGAGCGTTCAACTAAAAAGCAACGAGTAAGCGTGGAAGGAGCGTATTCAAAATCAGACATGGTGCTTCCACATCAGATACTTGAGTCAAGCATACCATCATACCAGCAACAGACCGCTGTTTTCCTTACTCATGATCACTTTAATCCGTCTTTAGGTATGTCTACAAGAAGTGGTGAGGAATTCGACAAGCTTGGTGTCGGGAATATGTGA 993 0.4552 MYHPTNVPDSSLIGSNSLVHGQHIDSGRSAMDPGNGGNSLGNNSNLNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDTLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGIVSEAPGSGVAAPTPGDMCQQELDNKTEPATPDPEKAANEHAPAKSLSVESFSSHHEPMTPDSGCQVGSPADSANGERSTKKQRVSVEGAYSKSDMVLPHQILESSIPSYQQQTAVFLTHDHFNPSLGMSTRSGEEFDKLGVGNM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01275 330 MobiDBLite consensus disorder prediction 108 126 - -
Trre4g01275 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 45 317 IPR044848 GO:0003700
Trre4g01275 330 MobiDBLite consensus disorder prediction 231 261 - -
Trre4g01275 330 MobiDBLite consensus disorder prediction 1 46 - -
Trre4g01275 330 MobiDBLite consensus disorder prediction 108 133 - -
Trre4g01275 330 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Trre4g01275 330 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Trre4g01275 330 Coils Coil 139 159 - -
Trre4g01275 330 FunFam Myb family transcription factor 48 106 - -
Trre4g01275 330 Gene3D - 48 107 - -
Trre4g01275 330 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Trre4g01275 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Trre4g01275 330 MobiDBLite consensus disorder prediction 189 273 - -
Trre4g01275 330 MobiDBLite consensus disorder prediction 1 23 - -
Trre4g01275 330 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Trre4g01275 330 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01275 Trre-Chr4 9904727 9906700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01275 84 330 G2-like Transcription Factor Family AT2G01060 59.608 7.14e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre4g01275 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01275 - - gmx:100786925 516.924