Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01272 ATGTATCCTAGATTGATACACCCTCATGAAGGTATTGTTGTTGGACAAGATGATTTGCAAGGTGGTGTTGTTGGTGGTGGTGTCTCTAATCTTAAGGGTGACCCTTGTCTTGTTTTAACTGCTGATCCAAAACCTCGTCTTCGTTGGACTCAAGACCTTCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGTCCTAGTAAAGCTACACCAAAAGCAATCATGCGGACAATGAACGTCAAGGGTTTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTCGGTAAGCAATCCGGAAAAGATATAGGGGAGGGATGCAAAGATGGTTCCTATCTTTTAGAAAGCCCCGGCACTGATAACTCTTCTCCAAAGCTGCCGACTTCTGACACAAACGAGGGTTATGAAATCAAGGAGGCATTAAGAGCACAGATGGAGGTGCAAAGTAAACTACATTTGCAAGTCGAGGCAGAGAAGCACTTGCAGATTCGCCAGGATGCGGAGCGAAGATACATGGCTATGCTTGAAAGAGCGTGCAAGATGTTGGCTGATCAATTTATCGGTGCTACAGTTATAGACACAGACAGCCAAAAGTTCCAAGGAATTGAGAATAAACCACCAAGAGGTTCCTTGGTTGACCATCTTGGTTTTTACTCCTTGCCACCATCTACTGAGGTGGCCGGAGTGAATGTTCCGGAAGAAGAAATACCTCCAACTCTCCCACCTCAAAGAGCCGATTGTTCAACCGAAAGTTGTTTAACCTCACATGAGAGCTCTGGAGGATTGGCTTTAGAAGGATCTCCAAGTGCCGGAAAACGGAGAATGCTCGGCATGGACTCAATGACAGCACCTTTGATTTGGAGTGAAGCTAATATGAAAACTCAAGCCATTAATTTAGGTCAAGGTAATCATCCTCTTGGAATAACTAGGTATGGTGGCTTGTAA 954 0.4413 MYPRLIHPHEGIVVGQDDLQGGVVGGGVSNLKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEGCKDGSYLLESPGTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIENKPPRGSLVDHLGFYSLPPSTEVAGVNVPEEEIPPTLPPQRADCSTESCLTSHESSGGLALEGSPSAGKRRMLGMDSMTAPLIWSEANMKTQAINLGQGNHPLGITRYGGL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01272 317 MobiDBLite consensus disorder prediction 247 265 - -
Trre4g01272 317 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Trre4g01272 317 MobiDBLite consensus disorder prediction 118 133 - -
Trre4g01272 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 268 IPR044848 GO:0003700
Trre4g01272 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677
Trre4g01272 317 Gene3D - 43 101 - -
Trre4g01272 317 Pfam MYB-CC type transfactor, LHEQLE motif 139 184 IPR025756 -
Trre4g01272 317 MobiDBLite consensus disorder prediction 111 134 - -
Trre4g01272 317 MobiDBLite consensus disorder prediction 239 276 - -
Trre4g01272 317 Pfam Myb-like DNA-binding domain 47 97 IPR001005 -
Trre4g01272 317 FunFam Myb family transcription factor 43 101 - -
Trre4g01272 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01272 Trre-Chr4 9875178 9879172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01272 19 258 G2-like Transcription Factor Family AT3G24120 46.718 2.77e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre4g01272 Myb_DNA-binding 3.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01272 - - gmx:100782369 544.273