LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g01243	ATGGACTCGAAAACTAGTGCTAGAGCTCTCTCGAAACAACAACAGAAAACATCTGGGATTCAGACACCTGAGGCGAAAGACCTCAAGTTTTCTTCGCTGTCGCTTCAAAAGACAGGGAAATCTGAGTCTGAAGATTTGTCTAAGTCTGTACAGAACACGTCGAAGCAGAATATTGGGGAAATTTATGAAAGCAAGAATAAATTTGGTTCTGGTGCTTCTTCATCCGCTCATGGAAAAGCGTCCGGAGAGAACATAGGCTCACAGGAAAGCTCTATTAATCAAGACAAGAAGACCTCAGAATATGGGAGTGTGAAGAACAGTTCGGTTTCTGCTAAAGCTAGCGACGGGGCCAGTAGTATTGCAAAGACAAGTGGTAGTGCTAAGATCAGTGACCGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCCGAGGAAGTACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCGTAAACAAGCCTCACAAGGCAAATGACATGAGATGGGAAGCTATCCAAGTGGTTAGAACTAGAGACGGAGCATTGGGTTTAGGCCACTTTAGACTTCTAAAGAGGCTGGGCTGTGGAGATATCGGTAGTGTTTACCTCTCTGAGTTAAGTGGAACTAAATGTTACTTCGCAATGAAGGTGATGGACAAAGGGTCGTTAGCAAGTCGTAAGAAGTTACTTCGTGCTCAGACGGAACGGGAAATTCTTCAGTCCCTTGACCACCCGTTTCTCCCAACATTGTACACTCATTTTGAGACGGAGAAGTTTTCATGCTTGGTCATGGAATTCTGCCCGGGTGGAGACCTCCATACTCTTAGGCAGAAACAACCAGGGAAGCACTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAGGTCCTACTGGCGATGGAGTACCTACACATGCTTGGGATTGTATACCGTGATCTTAAGCCAGAAAATGTCCTTGTTAGGGATGATGGACATATTATGCTCTCCGACTTTGATCTTTCCCTCCGATGTGCTGTTAGTCCAACCCTTGTTAAATCCTCTTCAATGGATTCGGAGCCTTTGAGAAAGAATACTGGTTACTGTGCTCAGCCTGCGTGTATTGAGCCGCCGTCCTGCATTCAGCCATCCTGTGTTGCTCCTACCTCTTGTTTTTCACCCCGTCTCTTTTCTAGCAAATCAAAGAAAGAACGGAAGCCCAAAACTGAACTTGGCAATCAAGTTAGTCCTCTACCTGAGCTCATTGCAGAGCCCACCGATGCTCGGTCTATGTCGTTTGTTGGAACGCACGAATACTTGGCACCTGAGATAATCAAGGGTGAAGGTCACGGTAGTGCAGTTGATTGGTGGACTTATGGAATCTTTCTCTACGAGTTGTTGTTCGGCAAAACTCCATTTAAGGGATCCGGGAACCGAGCCACGCTGTTTAATGTGGTAGGTCAGCCGCTACGATTTCCCGAAGCACCTGTTGTCAGCTTTGCAGCAAGGGATCTTATAAGGGGTTTGCTTGTAAAGGAACCTCAGCACAGATTGGCATATAAAAGAGGCGCAACCGAGATTAAGCAACATCCATTTTTCGAAGGTGTGAATTGGGCGCTGATCCGATGTGCTACCCCACCCGAGATTCCAAAGGCTGTTGAGTTTGAGAAGATACCTTCACCGGCCACCTCATCCGCCAGCGAAAAGACTGTTGTTAATCACATGCCAACAGCTCCAAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG	1779	0.4592	MDSKTSARALSKQQQKTSGIQTPEAKDLKFSSLSLQKTGKSESEDLSKSVQNTSKQNIGEIYESKNKFGSGASSSAHGKASGENIGSQESSINQDKKTSEYGSVKNSSVSAKASDGASSIAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSVNKPHKANDMRWEAIQVVRTRDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSSMDSEPLRKNTGYCAQPACIEPPSCIQPSCVAPTSCFSPRLFSSKSKKERKPKTELGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTYGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPATSSASEKTVVNHMPTAPNQKGSDNYLEFDFF	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g01243	592	Gene3D	Transferase(Phosphotransferase) domain 1	280	549	-	-
	Trre4g01243	592	MobiDBLite	consensus disorder prediction	1	123	-	-
	Trre4g01243	592	FunFam	serine/threonine-protein kinase D6PK-like	278	345	-	-
	Trre4g01243	592	MobiDBLite	consensus disorder prediction	140	166	-	-
	Trre4g01243	592	MobiDBLite	consensus disorder prediction	141	166	-	-
	Trre4g01243	592	FunFam	Serine/threonine-protein kinase AGC1-7	425	550	-	-
	Trre4g01243	592	PANTHER	FLIPPASE KINASE 1-RELATED	16	556	-	-
	Trre4g01243	592	SMART	serkin_6	194	532	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g01243	592	CDD	STKc_phototropin_like	193	550	-	-
	Trre4g01243	592	Gene3D	Phosphorylase Kinase; domain 1	187	279	-	-
	Trre4g01243	592	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	315	327	IPR008271	GO:0004672\|GO:0006468
	Trre4g01243	592	ProSiteProfiles	Protein kinase domain profile.	194	532	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g01243	592	FunFam	Serine/threonine-protein kinase D6PK-like	192	277	-	-
	Trre4g01243	592	SUPERFAMILY	Protein kinase-like (PK-like)	168	572	IPR011009	-
	Trre4g01243	592	Pfam	Protein kinase domain	429	532	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g01243	592	Pfam	Protein kinase domain	195	346	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g01243	Trre-Chr4	9632935	9635342	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g01243	42	592	AGC Kinase Gene Family	AT5G47750	78.058	0.0	862

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Trre4g01243		Pkinase	2.4e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g01243	K08286		-	gmx:100798088	995.727