Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01236 ATGAGTGAACAATTAGGGATACTAAAAGTCATAGTTGTTCAAGGGAAAAGATTGGTGATTAGAGATTTCAAGACAAGTGATCCTTATGTTGTGCTCAAATTAGGAAATCAGACTGCAAAGACTAAGGTCATTAATAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTGAATTTCACTTTGACAGAACCCTTGGGAGTTCTCAATTTGGAAGTATTTGATAAAGATCTTTTGAAAGCTGATGACAAGATGGGAAATGCATTTATCAATCTTCAACCATTAGTCTCTGCAGCAAGATTAAGAGATATTTTAAGAGTCTCTTCTGGCGAGACAACATTAAGGAAAGTAATACCTGATACCGAAAACTGTCTTGTCCGCGAAAGCAGTATAAATTCCGTTAATGGTGCGGTTGTGCAGAATGTTTGGTTAAGGCTTCGCGATGTTGAATCCGGGGAGATAGAATTAACACTTAAGTTGATTACTCCTGTTGCTACTTCAAAATAG 501 0.3733 MSEQLGILKVIVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFINLQPLVSAARLRDILRVSSGETTLRKVIPDTENCLVRESSINSVNGAVVQNVWLRLRDVESGEIELTLKLITPVATSK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01236 166 CDD C2_ArfGAP 5 150 - -
Trre4g01236 166 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 159 IPR035892 -
Trre4g01236 166 Pfam C2 domain 6 99 IPR000008 -
Trre4g01236 166 Gene3D C2 domain 3 164 IPR035892 -
Trre4g01236 166 PRINTS C2 domain signature 22 34 IPR000008 -
Trre4g01236 166 PRINTS C2 domain signature 46 59 IPR000008 -
Trre4g01236 166 PRINTS C2 domain signature 67 75 IPR000008 -
Trre4g01236 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 160 IPR044562 -
Trre4g01236 166 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Trre4g01236 166 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01236 Trre-Chr4 9578707 9579923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01236 1 159 C2H2 Transcription Factor Family AT4G05330 44.025 7.21e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01236 - - gmx:100779624 298.901