Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01220 ATGGTAGAATTCGATGTATCTATTGATGGTGATTCGAATGATGTTCATTCAACTGCTGGTAATACTAATGAAGCTGAAGATTCCAGCTATTCGGTATCCAGTGGGCAGGGTGGGTCGGATGATGATGAAGGTGATGATGATCATGAGGATGAGGATGAGGATGAGGATGACGAGGATGATGGCAATGCCAATGAATTTGATGATTCTGCATTTGTAGGCAATACGGTACGTATTGATTCTATGACTTCCGAAGAAATACGTGCTTTGGAATTTAGTAGTGTTGATGAGGCGTATGATTTCTATTACAAATATGGTAAATGCAAAGGTTTTTCTGTTAGGAAAAGCGATGATAAGAAGAAAAATGGGCCTGATGGTACTAAAATAATAACAAACAAGCTTTTTGTATGCAGTAAACAAGGTTTAAGAGATAAGAAACACCTATGTAAGCTAAATAGGAAAAGAGTGCACCGACGTTTGACACGTTCTAACTGCAATGCTAGGTTTCGTGTGACATACAAAGCCAATAAGGGTAAATTTGTAGTGTCTGTGTTTGAAGAGACTCATAACCATGAGTTAACCCCATCTAGGAAGAAAGGCTGCATATTTGAATTTATGCATAATTTTGAGCAGGCTGTGAGAAACTACAGAAATAACGAACTTGTTGCCGACTTTACATCAAAGTTCTCAGAACCTGTGCTGACAACTCAACTAAAAAAAATTGAGAGCCATGCCGCTGAAATTTTTACAGCGCAAATTTTCAAAGATGTGAAAGATGAAATCATGAAGGCTGGTGAATTGATTGTTAGGCAGAAGAAGGAAATTGGAGATACAAAGTTTTATACACTGACTAAATATTGTGTGGATAAGTATGAAAGAACAGTTATTTATGATGGCGTTACATTCCAATGTTCGTGCCGGATGTTTGATTCAAAAGGACTTCCGTGTTCTCATATTTTTAATGTGATGAAGGAAGAACATGTTGATCGCATTCATAGCAGTTTGATATTGTCGCGATGGACCAAGGATGCCAAAATTGCTTATTTGAACATGGCAGATGTTAATGGTTCAATTGATTCCGATTCGATTGAGCTTGCTCGTTTCGGGGCATATTGTTCTGTGTTTACAGCATTTTGCAAAGATGTTTCTAAAAAGGAAGGTGTGTATGGGGACATTATGGAGGACCTCATGAATTTAAGAAACAAATATTGCGGTGTGGAGGATCCTATTGGAACACAGAAGTCGGATGTTCGTGATCCAGTCCCGGTTAAGGTTAAAGGTGCTCCAAAGAGAAAAAAGAATGAAGCAAAAGCTGTCAGGCGCTGTACAAAATGCAACAGTCCTAGTCATAATGCGAGGACTTGTTCGGAGAAAAAGAGAAACAAAAGTTGCAATGCTGAAAATAGTGTTCAAACCATATATTCAGAGGTACCGGAAGACCGTTGTGAAAGTAGCGTGCAAAAGAAAAATAAATTTTCAGAGCAACCGAAAGATCGTGGTGAAAGTAGTTTTCAAAATAAAAAGAGACGTTGTGAGCAACCGAAAGATAATATTGAAAGCAGTATGCCAAAGCAAAAGAAATGCTCGATGCAACGGCAAAATCGTCGCGCTAATGTGTCAACACCAGCACAAACGGATGTTACAAGTACAGTCGGACAATTGACTCCCATGTATGGATTTCAACCTATGATGACTTACTTACATCCGATAATTCAACCGACGGACGCACCACATGTACCACCCATACAACCTGGATACCAATTATATGGAATGAATGTTGGTCTGTTACAACAAGTGATTAACTCTGCTGATAAAAAAGATTGA 1821 0.3866 MVEFDVSIDGDSNDVHSTAGNTNEAEDSSYSVSSGQGGSDDDEGDDDHEDEDEDEDDEDDGNANEFDDSAFVGNTVRIDSMTSEEIRALEFSSVDEAYDFYYKYGKCKGFSVRKSDDKKKNGPDGTKIITNKLFVCSKQGLRDKKHLCKLNRKRVHRRLTRSNCNARFRVTYKANKGKFVVSVFEETHNHELTPSRKKGCIFEFMHNFEQAVRNYRNNELVADFTSKFSEPVLTTQLKKIESHAAEIFTAQIFKDVKDEIMKAGELIVRQKKEIGDTKFYTLTKYCVDKYERTVIYDGVTFQCSCRMFDSKGLPCSHIFNVMKEEHVDRIHSSLILSRWTKDAKIAYLNMADVNGSIDSDSIELARFGAYCSVFTAFCKDVSKKEGVYGDIMEDLMNLRNKYCGVEDPIGTQKSDVRDPVPVKVKGAPKRKKNEAKAVRRCTKCNSPSHNARTCSEKKRNKSCNAENSVQTIYSEVPEDRCESSVQKKNKFSEQPKDRGESSFQNKKRRCEQPKDNIESSMPKQKKCSMQRQNRRANVSTPAQTDVTSTVGQLTPMYGFQPMMTYLHPIIQPTDAPHVPPIQPGYQLYGMNVGLLQQVINSADKKD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01220 606 MobiDBLite consensus disorder prediction 1 69 - -
Trre4g01220 606 Pfam FAR1 DNA-binding domain 99 193 IPR004330 -
Trre4g01220 606 MobiDBLite consensus disorder prediction 39 65 - -
Trre4g01220 606 Pfam SWIM zinc finger 296 318 IPR007527 GO:0008270
Trre4g01220 606 MobiDBLite consensus disorder prediction 480 521 - -
Trre4g01220 606 PANTHER OS01G0519700 PROTEIN 202 351 - -
Trre4g01220 606 MobiDBLite consensus disorder prediction 522 547 - -
Trre4g01220 606 ProSiteProfiles Zinc finger SWIM-type profile. 290 326 IPR007527 GO:0008270
Trre4g01220 606 SMART 26again6 301 328 IPR006564 GO:0008270
Trre4g01220 606 MobiDBLite consensus disorder prediction 11 38 - -
Trre4g01220 606 MobiDBLite consensus disorder prediction 414 460 - -
Trre4g01220 606 MobiDBLite consensus disorder prediction 477 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01220 Trre-Chr4 9457579 9460405 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g01220 FAR1 5.5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01220 - - tpra:123887991 561.607