Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01219 ATGGTAGAATTCGATGTATCTATTGATGGTGATTCGAATGATGTTCATTCAACTGCTGGTAATACTAATGAAGCTGAAGATTCCAGCTATTCGGTATCCAGTGGGCAGGGTGGGTCGGATGATGATGAAGGTGATGATGATCATGAGGATGAGGATGAGGATGAGGATGACGAGGATGATGGCAATGCCAATGAATTTGATGATTCTGCATTTGTAGGCAATACGGTACGTATTGATTCTATGACTTCCGAAGAAATACGTGCTTTGGAATTTAGTAGTGTTGATGAGGCGTATGATTTCTATTACAAATATGGTAAATGCAAAGGTTTTTCTGTTAGGAAAAGCGATGATAAGAAGAAAAATGGGCCTGATGGTACTAAAATAATAACAAACAAGCTTTTTGTATGCAGTAAACAAGGTTTAAGAGATAAGAAACACCTATGTAAGCTAAATAGGAAAAGAGTGCACCGACGTTTGACACGTTCTAACTGCAATGCTAGGTTTCGTGTGACATACAAAGCCAATAAGGGTAAATTTGTAGTGTCTGTGTTTGAAGAGACTCATAACCATGAGTTAACCCCATCTAGGTATGTGCACTTACACCCGGCTGTGAGAAACTACAGAAATAACGAACTTGTTGCCGACTTTACATCAAAGTTCTCAGAACCTGTGCTGACAACTCAACTAAAAAAAATTGAGAGCCATGCCGCTGAAATTTTTACAGCGCAAATTTTCAAAGATGTGAAAGATGAAATCATGAAGGCTGGTGAATTGATTGTTAGGCAGAAGAAGGAAATTGGAGATACAAAGTTTTATACACTGACTAAATATTGTGTGGATAAGTATGAAAGAACAGTTATTTATGATGGCGTTACATTCCAATGTTCGTGCCGGATGTTTGATTCAAAAGGACTTCCGTGTTCTCATATTTTTAATGTGATGAAGGAAGAACATGTTGATCGCATTCATAGCAGTTTGATATTGTCGCGATGGACCAAGGATGCCAAAATTGCTTATTTGAACATGGCAGATGTTAATGGTTCAATTGATTCCGATTCGATTGAGCTTGCTCGTTTCGGGGCATATTGTTCTGTGTTTACAGCATTTTGCAAAGATGTTTCTAAAAAGGAAGGTGTGTATGGGGACATTATGGAGGACCTCATGAATTTAAGAAACAAATATTGCGGTGTGGAGGATCCTATTGGAACACAGAAGTCGGATGTTCGTGATCCAGTCCCGGTTAAGGTTAAAGGTGCTCCAAAGAGAAAAAAGAATGAAGCAAAAGCTGTCAGGCGCTGTACAAAATGCAACAGTCCTAGTCATAATGCGAGGACTTGTTCGGAGAAAAAGAGAAACAAAAGTTGCAATGCTGAAAATAGTGTTCAAACCATATATTCAGAGGTACCGGAAGACCGTTGTGAAAGTAGCGTGCAAAAGAAAAATAAATTTTCAGAGCAACCGAAAGATCGTGGTGAAAGTAGTTTTCAAAATAAAAAGAGACGTTGTGAGCAACCGAAAGATAATATTGAAAGCAGTATGCCAAAGCAAAAGAAATGCTCGATGCAACGGCAAAATCGTCGCGCTAATGTGTCAACACCAGCACAAACGGATGTTACAAGTACAGTCGGACAATTGACTCCCATGTATGGATTTCAACCTATGATGACTTACTTACATCCGATAATTCAACCGACGGACGCACCACATGTACCACCCATACAACCTGGATACCAATTATATGGAATGAATGTTGGTCTGTTACAACAAGTGATTAACTCTGCTGATAAAAAAGATTGA 1797 0.3895 MVEFDVSIDGDSNDVHSTAGNTNEAEDSSYSVSSGQGGSDDDEGDDDHEDEDEDEDDEDDGNANEFDDSAFVGNTVRIDSMTSEEIRALEFSSVDEAYDFYYKYGKCKGFSVRKSDDKKKNGPDGTKIITNKLFVCSKQGLRDKKHLCKLNRKRVHRRLTRSNCNARFRVTYKANKGKFVVSVFEETHNHELTPSRYVHLHPAVRNYRNNELVADFTSKFSEPVLTTQLKKIESHAAEIFTAQIFKDVKDEIMKAGELIVRQKKEIGDTKFYTLTKYCVDKYERTVIYDGVTFQCSCRMFDSKGLPCSHIFNVMKEEHVDRIHSSLILSRWTKDAKIAYLNMADVNGSIDSDSIELARFGAYCSVFTAFCKDVSKKEGVYGDIMEDLMNLRNKYCGVEDPIGTQKSDVRDPVPVKVKGAPKRKKNEAKAVRRCTKCNSPSHNARTCSEKKRNKSCNAENSVQTIYSEVPEDRCESSVQKKNKFSEQPKDRGESSFQNKKRRCEQPKDNIESSMPKQKKCSMQRQNRRANVSTPAQTDVTSTVGQLTPMYGFQPMMTYLHPIIQPTDAPHVPPIQPGYQLYGMNVGLLQQVINSADKKD 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01219 598 MobiDBLite consensus disorder prediction 1 69 - -
Trre4g01219 598 MobiDBLite consensus disorder prediction 39 65 - -
Trre4g01219 598 MobiDBLite consensus disorder prediction 514 539 - -
Trre4g01219 598 ProSiteProfiles Zinc finger SWIM-type profile. 282 318 IPR007527 GO:0008270
Trre4g01219 598 Pfam SWIM zinc finger 288 310 IPR007527 GO:0008270
Trre4g01219 598 Pfam FAR1 DNA-binding domain 99 193 IPR004330 -
Trre4g01219 598 MobiDBLite consensus disorder prediction 11 38 - -
Trre4g01219 598 MobiDBLite consensus disorder prediction 472 513 - -
Trre4g01219 598 MobiDBLite consensus disorder prediction 406 452 - -
Trre4g01219 598 PANTHER OS01G0519700 PROTEIN 203 468 - -
Trre4g01219 598 SMART 26again6 293 320 IPR006564 GO:0008270
Trre4g01219 598 MobiDBLite consensus disorder prediction 469 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01219 Trre-Chr4 9457579 9460405 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g01219 FAR1 5.4e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01219 - - tpra:123887991 533.487