Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01214 ATGGACCTCTTCGCCGCCGAACACGTCGCTCCATTTCCCGACTCCGGCGACCTTCTCTTCGCCGCCGGTCTCCTCTCCTCTCACCAAAATCCCCAAAAACTCCGCCCTATCAGGTCCCTCCCTCCTCCTCCCGGTTACCTCGTTCACTCTCAGTCCCCTTCCAACCCTCAGCCTCTAGAACCTTCCATCAAGTCGCAAACCCCGACCGAATCCGGGTCGGGTCATTCTCAGTTGCCTCATGTACACGAACCCGGTTCATCTTTGGATGATGATGATGACGATGACGATGATGTGGATAATTCATCTGCAAATACTAAAGAATTTGGCTCCAGAAAGAAAAGGAAAAAGACGGCGAGAAAGCTTGAAGATTTTGTATCAAATTTGGTGAAGAGGGTGATGGAAAAGCAAGAGCAGATGCATAACGAATTGATGGAAATGATAGATAAGAAGGAAAAGGAAAGAGTACAGAGAGAAGAAGCTTGGAGGCGCGAGGAGATGGAAAGAATTAAGAAGGACGAAGAAGCTAGAGCGGTAGAAAGGTCTCGTAGTTTAGCTCTCATATCGTACATTCAGAAACTATTACGTCATGAAATTCAGATTCCTCAACCAGCAGAAGAAAGCCAGAAACTATTAAGTCAAGCAATTAAGATCTTTCAGCCAGCTGAAGGAAGGGGAAAAGGCGAAGAGGATGAAGTTGAGATGAACAACAAAAGAATTTTCAACGGTGATCCGAGTAACAATAGATGGCCAGTTGTGGTGAACAACAACAAAAGGGATTTCAACGGCGATACGAGTAACAATAGATGGCCAGATGTGGAAGTACAAGCGCTCATAACAGTAAGAACTTCATTGGAACACAAGTTCGGTCATATGGGATCGAAAGGATCAATATGGGAGGAGATATCTGATGCAATGCGAGACATGGGATACAATCGTTCTGCGAAGAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTACTATAAGAGGACAGTTGGAAGCGGCAAGAAACGACCTCTAAATAGTAAAACTTGTCCTTACTTCGATGAATTGGACAATCTGTATAGAAATGGATCCTCCAACAGCCTTGGAAATGCATTAACCATTACCAACAATGTTCCCATTAGTGAAGAAAAGGAGCAAGGTGAAATTTGA 1155 0.4442 MDLFAAEHVAPFPDSGDLLFAAGLLSSHQNPQKLRPIRSLPPPPGYLVHSQSPSNPQPLEPSIKSQTPTESGSGHSQLPHVHEPGSSLDDDDDDDDDVDNSSANTKEFGSRKKRKKTARKLEDFVSNLVKRVMEKQEQMHNELMEMIDKKEKERVQREEAWRREEMERIKKDEEARAVERSRSLALISYIQKLLRHEIQIPQPAEESQKLLSQAIKIFQPAEGRGKGEEDEVEMNNKRIFNGDPSNNRWPVVVNNNKRDFNGDTSNNRWPDVEVQALITVRTSLEHKFGHMGSKGSIWEEISDAMRDMGYNRSAKKCKEKWENINKYYKRTVGSGKKRPLNSKTCPYFDELDNLYRNGSSNSLGNALTITNNVPISEEKEQGEI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01214 384 SMART sant 265 327 IPR001005 -
Trre4g01214 384 MobiDBLite consensus disorder prediction 50 76 - -
Trre4g01214 384 CDD GT1 267 331 - -
Trre4g01214 384 PANTHER FI21293P1 68 366 - -
Trre4g01214 384 Gene3D - 269 330 - -
Trre4g01214 384 Pfam Myb/SANT-like DNA-binding domain 267 354 IPR044822 -
Trre4g01214 384 ProSiteProfiles Myb-like domain profile. 261 325 IPR001005 -
Trre4g01214 384 MobiDBLite consensus disorder prediction 30 119 - -
Trre4g01214 384 FunFam Trihelix transcription factor GT-2 269 330 - -
Trre4g01214 384 Coils Coil 133 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01214 Trre-Chr4 9356765 9358917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01214 112 361 Trihelix Transcription Factor Family AT5G47660 42.400 2.24e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre4g01214 Myb_DNA-bind_4 2.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01214 - - tpra:123899422 645.966