Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01212 ATGGCAGAATCAGACAACGAGTCAGGAGGAGGTCAAACAGGTTGCAGAGAGCAAGACAGGTTTCTTCCAATAGCAAACGTGAGTAGGATCATGAAAAAAGCTTTACCAGCAAACGGAAAGATCTCAAAAGAAGCAAAAGAAACAGTTCAAGAGTGTGTATCAGAATTTATAAGTTTCATAACAGGGGAAGCTTCTGATAAGTGTCAGAAAGAGAAGAGAAAAACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGATTTGAAGATTATGTTGAGCCACTTAAGATTTATTTGAGTAAGTATAGAGAAATGGAAGGGGAAAAAAGTGCTATGATTGGAAGAAGTGATCATAGAGATCATGGAAATGTTGGTGAAGGTAGTGGTGGAGTTTATAATCATGGAGTTGGAGTTCCATCTTCTATGATGGTGATGATGGGCCATAATATGTATGGATCTGGAAGTGGATCACCATCTTTTGGAAGCAGTACCAGATAG 504 0.3869 MAESDNESGGGQTGCREQDRFLPIANVSRIMKKALPANGKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLSKYREMEGEKSAMIGRSDHRDHGNVGEGSGGVYNHGVGVPSSMMVMMGHNMYGSGSGSPSFGSSTR 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01212 167 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Trre4g01212 167 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Trre4g01212 167 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Trre4g01212 167 Gene3D Histone, subunit A 11 128 IPR009072 GO:0046982
Trre4g01212 167 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Trre4g01212 167 Coils Coil 165 167 - -
Trre4g01212 167 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre4g01212 167 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre4g01212 167 FunFam Nuclear transcription factor Y subunit B-3 10 131 - -
Trre4g01212 167 SUPERFAMILY Histone-fold 18 123 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01212 Trre-Chr4 9346011 9346514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01212 1 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.471 1.70e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre4g01212 CBFD_NFYB_HMF 8.3e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01212 K08065 - gmx:100305641 224.942