Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01180 ATGACTTCATTAGCTACCAAAAACCTATGGATTAGGAAGCAACAATGTCCTTGTGGAGATTGGAAATGTTACATTACATATGAGGGTGATTCTGAGGAGGGTTTAGCAGCACCGGAATCGGTGAAAGAAGATAAAATATCATCTTGTAGAGCTATGATTATTACCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGAAGCTTTTGAACATTATGGTAATTTTGCTAGGAAAAATGGTTTTTCTATTAGGAAGGAAAGATCTAGAATTAGTCCTCAGTTAGGTGTTTATAAGCGTGATTTTGTTTGTTACCGATCAGGGTTTGCACCGGTGAAGAGGAAGGTTAATGGCGAACATCAGAGGGATAGGAAATCGGTGAGGTGCGGATGTGATGCTAAAATGTATCTATCTAAGGAGGTTGTTGATGGTGTTTCTCAATGGTTTGTTGTTCAGTTTAGTAATATACATAATCACGAGCTTTTGGAAGATGATCAAGTTCGTCTTTTACCTGCGTATAGGAAAATCCATGAGGCTGATCAAGAGCGTATATTGTTGCTTTCGAAAGCTGGATTTCCGATACATCGGATAGTGAAAATGCTTGAGGTTGAAAAGGGGATTCAAGGTGGACATTTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTCCAAAACCGTAAGAAGATTGTTCAAGAGAATGAGGCATTGCTAAGTGAGAAAAGAGAAAATGATGTTTTGGAACTTCTTGAGGTGTGCAAAGCAATGAAAGAAGCTGATGTTGAGTTTGTTTATGATTTTACGGTCGATGAGAATGAGAAGGTTGAAAATATAGCTTGGTCGTATGGTGATTCTGTTAATGCAAATGCCATGTTTGGTGATGATGAAACACCACAATCCTTCGCATGGGCGTTACAGACATATCTCCGGTTCATGAGAGGAAGATGTCCACAAACAATTCTATCTGATCTTGATCCTGGTCTTAGAGACGCCATCAGAAGCGAATTTCCAGGAACTAAACATGTCATTCCAGTGTGGAATATTATAAACAAGGTATCCAGTTGGTTTTCTCTCCATCTTGGGTCTCGTTATGGCGAATTTAAATCCGAGTTTAATGCCTTATTTAACATTGAGAATACTGAGGAATTTGAACTTCAGTGGAGCCAAATGATTTCTGTTTTTGAACTTGATTCAGATAAACATATTGATTTACTGTATTCTGTTCGAGCCTCCTGGGCACAACCCTATGTGAGAGGTTATTTTTTGGCTCGAATGGCAACAACAGCTTATTCCAAGTCTATAGATGCATTTTTGAAAGAAATCTTCACTCAACATACATGTTTGCGTAGCTTTTTTGAACAGGTTGGCATTTCTGCAAATTTCCAACGTCAGCCACATCAAGAGACTCAATTTACAAATCTTAGAACTTGCATACCAATTGAAGAGCATGCACGGAGCATTCTCACACCTTATGCTTTCAATGCTTTGCAACAAGAGTTATCGCTGGCAATGCAATATGCTACATCTGAAATGGCCAATGGATCATATATTATACGACACTTCAAAAGGTTGGATGGAGAGTGGCTCGTATTCTGGCTACCAGAAGACGAACAGATACACTGCTCTTGCAAGGAATTTGAATCATCGGGAATATTATGCAGACACGCTCTTCACATACTTGTTATAAAGAATTACTTTCAGCTTCCTGACAAATACTATTTAAGTAGATGGCGCCGGGAATGTTCTTTACTTGTCGAGGATGAGCGTAACCACCAAAGTATTATTGGTGGGGAATGGTTTCAAGAATATCAATCTATAGCTGAAACTTTGTTTTCAGAATCATCAATTACAAAGGAGCGATCTGACTTTGTTCGCAGAGAACTGACAAAAGAACTTAATAGGATTCTTAATGAGGTTAGAAATCTGCCTGAGACTGATGAAGTCTGCAACATGAATGTGACGGTTTCGCCAAATAGCTAG 1974 0.3891 MTSLATKNLWIRKQQCPCGDWKCYITYEGDSEEGLAAPESVKEDKISSCRAMIITPYVGMVFKSDDEAFEHYGNFARKNGFSIRKERSRISPQLGVYKRDFVCYRSGFAPVKRKVNGEHQRDRKSVRCGCDAKMYLSKEVVDGVSQWFVVQFSNIHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEVEKGIQGGHLPFLERDVRNFVQNRKKIVQENEALLSEKRENDVLELLEVCKAMKEADVEFVYDFTVDENEKVENIAWSYGDSVNANAMFGDDETPQSFAWALQTYLRFMRGRCPQTILSDLDPGLRDAIRSEFPGTKHVIPVWNIINKVSSWFSLHLGSRYGEFKSEFNALFNIENTEEFELQWSQMISVFELDSDKHIDLLYSVRASWAQPYVRGYFLARMATTAYSKSIDAFLKEIFTQHTCLRSFFEQVGISANFQRQPHQETQFTNLRTCIPIEEHARSILTPYAFNALQQELSLAMQYATSEMANGSYIIRHFKRLDGEWLVFWLPEDEQIHCSCKEFESSGILCRHALHILVIKNYFQLPDKYYLSRWRRECSLLVEDERNHQSIIGGEWFQEYQSIAETLFSESSITKERSDFVRRELTKELNRILNEVRNLPETDEVCNMNVTVSPNS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01180 657 ProSiteProfiles Zinc finger SWIM-type profile. 529 562 IPR007527 GO:0008270
Trre4g01180 657 Pfam SWIM zinc finger 528 555 IPR007527 GO:0008270
Trre4g01180 657 Pfam MULE transposase domain 280 348 IPR018289 -
Trre4g01180 657 Pfam FAR1 DNA-binding domain 71 161 IPR004330 -
Trre4g01180 657 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 625 IPR031052 GO:0006355
Trre4g01180 657 SMART 26again6 537 564 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01180 Trre-Chr4 9218111 9221025 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g01180 FAR1 2.2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01180 - - gmx:100817107 1123.61