Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01161 ATGGGAACTTCTCAACAACAACCAAATTCAGCTTGTATTAATTCATCATCTAATGGTAGTAGCAATCAAGGAACCAATGTTTCTTTTGAAACAAGCAACATTGAGAAGCAATTCTATACCTTAGAATCATCTCAAGTAACCACTGATTTCACAGCTTTTGATTCTCCTTCATCTGATAGTGTTAATTCATTCAACAATAGATGTTCTTTTTGTCCACAACTTTCTCATCATTACTCCTCTGACAATAACATGAACGGATCGCCGATAAGTGTTTACTATACCGCAGATAATGATAGCTTTGAATTGAAGCAAAAACTTAAAGAATTGGAGATTTCATTGTTAGGCCCCGAGTCAGATATCGTCGATAGCTGTCAGTCCTTCTCAAACGGTATCCGTCACCAAGGTGTGTCTCAACATAATTGGTCTAAGATTGTAGAAATGATTCCAAAGCTTGACTTGAAAGAAGTTCTTATTACATGTGCAAAAGCTGTTTCTGATGGTGATATTGAAACAGCATCAGGATACATGAACAATGTGTTAGGAAAAATGGTATCGGTCAGCGGTGTTCCGATTGAGAGGTTAGGTGCTTACATGTTGGAAGGCTTAAGAGCAAGGTTGGAATCATCAGGGAGTGTAATTTATAAAGCATTGAAATGTGAAGAACCGACGAGCAACGAATTAATGAGTTATATGCAAACATTGTATCATGCTTGTCCATATTTTAAGTTTGCTTACATATCTTCCAATGTTTTCATTTGTGAAGCATTGCAAAATGAATCAAGAATTCACATAATTGACTTCCAAATTGCACAAGGGACACAGTGGTTGTCACTTTTGCAGGCTCTTACGCGTAGACCTGGTGGACCTCCGTTCGTTCGTGTAACAGGTATCGATGATTCACAATCGTTTCATGCTAGAGGTGGAGGACTTCATATTGTAGGGAAAAAGCTAGCAGATTATGCTAAAACTTATGGAATTCCATTTGAGTTTCATAGTGTTGCAATGTTTGGAAGTGATATTCAACTGGAAGATCTTGTAGTTCAAAATGGTGAAGCTATTGCTGTGAATTTTCCTTTTGCTTTGCATCACATGCCGGATGAGAGTGTGAGCACGGAGAATCATAGAGACCGGCTTTTAAGATTGGTGAGGAGTTTGTCACCTAAGGTTGTGTTACTTGTGGAGCAAGAATCCAACACAAACACTTCTCCATTTTTTCAAAGGTTTGTTGAGACTTTGGATTATTATACTGCTATGTTTGAATCAATTGATGTGGCTTTTCCTAGAGATGATAAGAGGAGGATTAATACAGAACAACATTGCGTGGCACGCGATATTGTTAACATTATAGCTTGTGAAGGAGATGAGAGGATCGAAAGACATGAACTTTTTGGAAAGTGGAGGGCAAGATTTTCAATGGCGGGTTTTGTACCGTTACAGTTGAGTCCCTCGGTAATTGATTCAATTAGAAATCTCTTGAAGCATTTCAATGAAAATTATAGGATTGAAGAGACAGATGTTGCTATCTATTTAGCATGGAAGGGTAGATTTATGTGCACATCTTCTGCTTGGAGATGTTCTTAA 1581 0.3789 MGTSQQQPNSACINSSSNGSSNQGTNVSFETSNIEKQFYTLESSQVTTDFTAFDSPSSDSVNSFNNRCSFCPQLSHHYSSDNNMNGSPISVYYTADNDSFELKQKLKELEISLLGPESDIVDSCQSFSNGIRHQGVSQHNWSKIVEMIPKLDLKEVLITCAKAVSDGDIETASGYMNNVLGKMVSVSGVPIERLGAYMLEGLRARLESSGSVIYKALKCEEPTSNELMSYMQTLYHACPYFKFAYISSNVFICEALQNESRIHIIDFQIAQGTQWLSLLQALTRRPGGPPFVRVTGIDDSQSFHARGGGLHIVGKKLADYAKTYGIPFEFHSVAMFGSDIQLEDLVVQNGEAIAVNFPFALHHMPDESVSTENHRDRLLRLVRSLSPKVVLLVEQESNTNTSPFFQRFVETLDYYTAMFESIDVAFPRDDKRRINTEQHCVARDIVNIIACEGDERIERHELFGKWRARFSMAGFVPLQLSPSVIDSIRNLLKHFNENYRIEETDVAIYLAWKGRFMCTSSAWRCS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01161 526 Pfam GRAS domain family 153 524 IPR005202 -
Trre4g01161 526 ProSiteProfiles GRAS family profile. 144 524 IPR005202 -
Trre4g01161 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 101 513 IPR005202 -
Trre4g01161 526 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01161 Trre-Chr4 9085222 9086802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01161 26 524 GRAS Transcription Factor Family AT4G17230 55.248 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre4g01161 GRAS 1.3e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01161 - - gmx:100817987 724.161