Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01154 ATGTGTATGACCATCGAAAATGAGTATCAATTTTCATCATTTGCTGAAATTAATTCAACTAGGTCAAGTTGGAATTGTAGGGCAAAGATCATCCGACTTTGGCAAACTTCTAATTTCAATCGTAACACATTGCCTTTTTCTATTGAAATGGTTTTAATGGATTCTTATGGTGGTAGAATTCATGCTACAGTTAAAACAACTCTTATTTATAAATTTAAGGATGAGCTAATAGAGGGAAAAGTTTATACTTTTGAAAAGATGGGGGTCTCACCTAATGTTGGAGCTTATCGTACTACTCATCACAATTTTAAGTTAAATTTCAAAGCCACTACGTTGATTCAAAGACTTTTTAATCAAGATATTGTTAGATCTCCATATAACTTTGTTCCAATTGGGCAGATTGTAGGAGGCTCTTATGACACTGATTTCTTAGTTGATATTATTGGAATATTGATTGATGTTGGTCGTGAGCGTGAAATTAATGATCAAGATGGAACACCCACAAAAGTGAATGTCATTGAAATAGAGCAAGATGGGAGTAAAATTCAATCTTTTCAAGGTAAGATTCATATTCAAAACTGTCTCAACTCTACCTATTTGTTCTTTAACCCTTTCTAA 618 0.3269 MCMTIENEYQFSSFAEINSTRSSWNCRAKIIRLWQTSNFNRNTLPFSIEMVLMDSYGGRIHATVKTTLIYKFKDELIEGKVYTFEKMGVSPNVGAYRTTHHNFKLNFKATTLIQRLFNQDIVRSPYNFVPIGQIVGGSYDTDFLVDIIGILIDVGREREINDQDGTPTKVNVIEIEQDGSKIQSFQGKIHIQNCLNSTYLFFNPF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01154 205 CDD RPA1_DBD_A_like 27 113 - -
Trre4g01154 205 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre4g01154 205 Gene3D - 10 115 IPR012340 -
Trre4g01154 205 Gene3D - 119 183 IPR012340 -
Trre4g01154 205 SUPERFAMILY Nucleic acid-binding proteins 9 117 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01154 Trre-Chr4 9015461 9016438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01154 3 181 Core DNA Replication Machinery Family AT2G06510 21.505 1.74e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01154 - - tpra:123915358 260.766