Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01153 ATGGACCCTGGGAAGCTATTCATTGGAGGGATTTCCTGGGACACAAATGAAGATCGACTCAGATCGTATTTCCAGAACTTTGGAGATGTAGTTGAAGCTGTGATTATGAAGGATCGTACCACCGGACGTGCCCGTGGTTTTGGGTTTGTTGTTTTTTCTGATCCTTCTGTTGCCGAACGAGTTGTTATGGAAAAACACGTCATAGATGGTAGAACTGTTGAAGCGAAAAAAGCTGTCCCTAGAGATGATCAGAATGTGTTTAGCAGAAGCAACAGCAGCAGTCATGGATCGCCTGGTCCTACTCCTATACGCACAAAGAAGATATTTGTCGGAGGTTTAGCATCGACAGTTACTGAGAGTGATTTTAAGACTTACTTTGATCAATTTGGAACAATTACTGATGTTGTTGTGATGTATGACCATAACACTCAACGGCCTAGAGGTTTTGGATTCATCACATATGATTCTGAGGAAGCAGTTGAGAAAGTGTTGCACAAAACTTTTCATGAACTTAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCGAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAGCTAGGTGGATTTAGTTACGGTACTATGAGTAGAGTTGGTAGTTTTTCTAATGGTTTCACTCAGGGATATAGTCCAAGCCTCATTGGAGGACATGGACTTAGATTAGACGGTAGATTGAGTCCTGCTAATGTTGGTCGTAGTGGATATACTCTTTTTAGTCCAAGTTACGGGACAGGACTCAACTTTGAGACACCATTGAGCCAAAATGAAAACGAAAACTTTATGTCTAACTTTGTCACGGGACGGGCATTGAGCTCTCCGTACAGTGCAAGTCCGAGCAGGTACAATAATGCCATAGGGTATATTGGTTCCAATGTTGGAAACAATTCAGCCATAAGTTCAACAAATCAGAGTTTGTGGAGTAATGGAAATCTTAACTATGCTAATAACCCTGCAAGCTCTGATGCTTTCGTGGGTTACGGAAGTGAAAATTCAAGTTTGGGTTCTTTCGGTAATATCGGATCACTTTGCAGTACTTCTGTCGGGGGTGCTACTAATCAAGCTGGAACTATTGGCTCTGGATATGGTAAGAACAGTCTTAATTATAGGCTTGGAGATGTGATTTTAGGGTCAAAAGCAGTAGGTTATGGAAAAAGCAATGAAAACATTGTTGAATCAGATTCATCCTACGCTTTCTCAAACGGCAATTATGGTGAGGCATACAAAAATACTTATGAAGCTGGACAGTTTTATCAAGACCATACTTGGAGATCAACAACTTCAGAACTTGAGGATTCCGGTTCTCTTAGTTTTGGCCTTGAAAATGCTGTTTCGGATTTAATGCGCAAAAGCTCTAGTGGCGGTCACATTGGAGCTTATGCTGTTGCTAATAGACAATCAAACAGAGCTAAGTTGATTCATGTTTAG 1449 0.4127 MDPGKLFIGGISWDTNEDRLRSYFQNFGDVVEAVIMKDRTTGRARGFGFVVFSDPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFSRSNSSSHGSPGPTPIRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSRGQLGGFSYGTMSRVGSFSNGFTQGYSPSLIGGHGLRLDGRLSPANVGRSGYTLFSPSYGTGLNFETPLSQNENENFMSNFVTGRALSSPYSASPSRYNNAIGYIGSNVGNNSAISSTNQSLWSNGNLNYANNPASSDAFVGYGSENSSLGSFGNIGSLCSTSVGGATNQAGTIGSGYGKNSLNYRLGDVILGSKAVGYGKSNENIVESDSSYAFSNGNYGEAYKNTYEAGQFYQDHTWRSTTSELEDSGSLSFGLENAVSDLMRKSSSGGHIGAYAVANRQSNRAKLIHV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01153 482 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Trre4g01153 482 MobiDBLite consensus disorder prediction 79 104 - -
Trre4g01153 482 FunFam Heterogeneous nuclear ribonucleoprotein 1 3 85 - -
Trre4g01153 482 Gene3D - 3 86 IPR012677 -
Trre4g01153 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Trre4g01153 482 Gene3D - 103 189 IPR012677 -
Trre4g01153 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Trre4g01153 482 SUPERFAMILY RNA-binding domain, RBD 97 208 IPR035979 GO:0003676
Trre4g01153 482 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 476 - -
Trre4g01153 482 CDD RRM2_Hrp1p 107 184 - -
Trre4g01153 482 CDD RRM1_hnRNPA_hnRNPD_like 6 76 - -
Trre4g01153 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Trre4g01153 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Trre4g01153 482 SMART rrm1_1 107 179 IPR000504 GO:0003723
Trre4g01153 482 SMART rrm1_1 5 76 IPR000504 GO:0003723
Trre4g01153 482 MobiDBLite consensus disorder prediction 84 100 - -
Trre4g01153 482 SUPERFAMILY RNA-binding domain, RBD 3 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01153 Trre-Chr4 9006324 9008350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01153 6 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.255 4.40e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01153 K14411 - cave:132171089 606.29