Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01150 ATGGTTTCTCTTGAAGAATCTCGTTCGAATTCGAATCGTTTTCCTTTGCCACGAACCTATCAGTATCATTCCTCCAAATCGGAGCGTAACATCGGAAGATCGATGAGAACAAGAAGATCTAGTATCTTCGATGAAGATAACAGTAGTTGCACGTTTACCGAGAGATCCACGTGTGTATCGGAAAATTTAACCGATTCCGTCGTCGACCTCCGTCTCGGTGAACTTGCTTCCCGGAATAACAAATCCGGGAAATCCTCTGCAACTGAGGAGGAGTTTCTTGATTTATCGCAAGTTTTCAGTGAATATTCTGCTTGTAGTAGTGATATCTCCGGTGAACTTCAGCGTTTAGCGACGTTACCGTCGCCGGAATGTAATCTGAAGAGTGACGGTGGAGGAGACGGTGTGGTTGAAGTTGAACCGGAGCCTTGCATGGGGTTTTTGCAGAGAGAGAATTTCTCAACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAACCGACGGTGAAGCTTTGTATCGACGGTCTACAATCTTCGTCTGTGGCGGTGAAGCGTTCTGCTGCGGCGAAATTGAGGTTGTTAGCTAAGAATCGTGCTGATAACAGAGTTCTAATTTGTGAATCCGGTGCTGTACCTTTTCTTGTTCCTCTACTTCGATGCAGTGATCCATGGACGCAAGAACATGCAGTTACAGCGCTTTTGAATCTTTCACTTCATGAGGATAACAAGAAGGTGATATTCAATGCCGGAGCAGTGAAATCGTTTATTTATGTGTTGAAAACAGGGACAGAAACTTCGAAACAGAACGCAGCTTGTGCACTTTTGAGCTTAGCTTTAGTGGAAGAAAACAAGAGCTCAATTGGTGCTTCTGGCGCGATTCCGCCTCTTGTTTCGCTTCTGCTAAACGGTTCAAACAGAGGGAAAAAGGATGCTTTAACGACGCTCTACAAGCTTTGTTCTGTTAAGCAGAATAAGGAGAGAGCAGTCACTGCCGGTGTGGTGAAGCCGTTGGTTGAGCTTGTTGCTGAACAAGGGAATGGGATGATGGAGAAAGCAATGGTGGTGTTGAATAGTTTAGCAGGGATTGATGAAGGGAAGGAAGCTATTGTTGAAGAAGGTGGAATTGCAGCTCTTGTTGAAGCCATTGAAGATGGGTCTGTGAAAGGAAAGGAATTTGCGGTTTTAACACTTCTTCAGCTTTGTGCTGAAAATGTTGCAAACAGAGGGTTACTTGTTAGAGAAGGTGGAATTCCTCCTCTTGTAGCTCTTTCTCAGAATGGAACTCTTCGAGCTAAGCATAAGGCTGAGACGCTCCTTCGATACTTGAGAGAATCAAGACAAGAAGCATCAACTTCGGCTTCTTAA 1365 0.4469 MVSLEESRSNSNRFPLPRTYQYHSSKSERNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNNKSGKSSATEEEFLDLSQVFSEYSACSSDISGELQRLATLPSPECNLKSDGGGDGVVEVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLICESGAVPFLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKVIFNAGAVKSFIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVTAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIDEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAENVANRGLLVREGGIPPLVALSQNGTLRAKHKAETLLRYLRESRQEASTSAS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01150 454 PANTHER U BOX DOMAIN-CONTAINING 124 443 - -
Trre4g01150 454 SUPERFAMILY ARM repeat 166 443 IPR016024 -
Trre4g01150 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 209 251 IPR000225 GO:0005515
Trre4g01150 454 Gene3D - 313 453 IPR011989 -
Trre4g01150 454 Gene3D - 150 312 IPR011989 -
Trre4g01150 454 FunFam U-box domain-containing protein 4 155 307 - -
Trre4g01150 454 FunFam U-box domain-containing protein 4 308 449 - -
Trre4g01150 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 374 IPR000225 GO:0005515
Trre4g01150 454 MobiDBLite consensus disorder prediction 1 28 - -
Trre4g01150 454 SMART arm_5 362 402 IPR000225 GO:0005515
Trre4g01150 454 SMART arm_5 404 444 IPR000225 GO:0005515
Trre4g01150 454 SMART arm_5 280 320 IPR000225 GO:0005515
Trre4g01150 454 SMART arm_5 198 238 IPR000225 GO:0005515
Trre4g01150 454 SMART arm_5 239 279 IPR000225 GO:0005515
Trre4g01150 454 Pfam Armadillo/beta-catenin-like repeat 282 320 IPR000225 GO:0005515
Trre4g01150 454 Pfam Armadillo/beta-catenin-like repeat 200 237 IPR000225 GO:0005515
Trre4g01150 454 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01150 Trre-Chr4 8980428 8982322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01150 32 447 U-box Gene Family AT2G23140 40.000 4.45e-82 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01150 - - tpra:123898555 826.239