Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01139 ATGACATCGTCTAGGTTCCAATTCTTCGTACGGTGGAACTGTAACTCCATAGTGATTCTTGCTTCAAGAAAAGACACAGTGAAATCACTTCTCAAGAAACTTTCATCCAAAACCAAAATTCCGATTGCAGAATTACGATTAATTTACAAAGGAAAACAGCTTCATGAAGAACAGATTCTCGGCGACTGCGGCATTGAAAACGATGAAACTCTTCAATTGCTTGGATACTTGAGGAGTACACAGTGTCCTAAAGTTTGGGGAGCCACAGATTTTATTGCTTCATTGATTCTCAAAATTTGTAGAGGTGAAAATGTCAAAGATCTTTTCAAGATTATTCAAAATCACTTTAGAAATAACATGGAAAAAGCTGAATATTTTGATGTTTTTATGTTTATGAAAATTCCTTCATTGTTGGTAGAACTTTATATGTCGCCGAATGCTAATAATAAAATCGATGCTGATTCGTCGATTAAGGAATTTGTGCAAATATGTTTAGAATTGAAGCGCAAAGAGGTGCAGGTTTTTTACCTTGAAGCTGTTTTGGAGTTTTGTGAATTGCTTAGAGGGGTAGGGTCTAAGTGTGATGATCTTTTGTATGTTTTTTGCCGGAATGGTTTTGCGACTCTGTTGGCGTTTTTTGGTGGTGTTACTGCTGTTAGGAATTATTCTAAATGGAGGGCTTTGATTCGAGGTATTTTTGTCTGTGTTTGTGAGACTTTAGATGGGTTGTTGAGTTATTTGGATTTGAGTATGACTGGTCTGACTAGCGAGGGGATTTCGTGCAGTGTTGTTTGGGCTTTTATGAAATTCTCGGCACCTTTGAGGAATGGAATTGCCGAGAAGCAACCAGCATTCGATGAATATGAGAATGGAATTTGCTATGAGGAGGATCCTTCGATTGCAGAAGTAGTTGATCAATATCGTAATGTATTTATTCAGTTATTGACCAAAATGGACGAGTGCCTTCAATTCATGGAGAATTGCTTCGTCAACAAGGAACAAAGAGAAGGGGGTGGGGATGTTATCCAAATTGGGCAGCCTCATTATCTTTTCGTCCTGAAGGAATTGTATCATATATCTAAGCTATATAGCGGTGCAGAAGAGATGTTTTGGGGAGTTTTGTTGCGTCGAAAAAGTATGCTATCTCAATTGATTGTCCGGTATGCGGATAAAAAGGATAATCATCGGTGGGTACTTGAGAATATGAGTGTGACTGATTTTGAATCTAGGAGGCATTTGGCGATGACACTATTCCCTGACATAAAACATGAATTATTGGGATATGAGATGCTTATTGGCAGGTCTGAGGTTTTGACTGAATCTTTTGAGTACATATCACGAGCTAAGCCTACATCTTTGGAGGGAGGTTTATTTATGGAATTCAAGAATGAGGATGCTACAGGACCAGGTGTTCTGAGGGAGTGGTTTGTTTTGGTGTGTAAAGAAATATTTAATCCGAAAAATGCTCTTTTTGTGGCATGTCCAAATGACCACAGGAGATTTTTTCCTAATGCTGCATCTAAGGTACATCCTCTACACCTGAAGTACTTCAGCTTCTCTGGACGTATGATTGCATTAGCTTTGAAGAGTAAGGTGCATGTGGGTATCTATTTTGATCGTGTGTTTTTCAAGCAATTGGCCGGAAACTATATTACTTTAGAAGATATTCGAGATGCCGATCCTATAATGTATCATAGCTGCAAGAAAATATTGGAGATGAATGCTGATTATATTGATTCAGATGAATTAGGACTGACATTTTCTATAGAGGTGGAAGAATTAGGACACAGGAAAGTGATTGAGCTTTGCCCTGGTGGCGAAAGCCTTGTTGTGGATAGTAAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTGACATCCGTATCTGGGCAGGTATCACATTTTGCCGCGGGTTTTGCTGATATTATATCTGGCTCAAGGCTAGAGTTCTTTCGATATTTAGAACTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATGCCATTTCTGTTGAAGATTGGAAGGCACATACTAAGTATAATGGCTATAAAGCGATTGATCGTCAGATAACTTGGTTTTGGGAGATCGTTGGGAGAATGTCAGCAAAGCAAAAGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTTCGTGGTTTGGATTCCCGTCTATTCATTTGCAAATCCATCGAACCTGATAATCACTTGCCCTCATCTCACACATGTTTTTACGAGCTGTGCTTTCCTCCATATTCTTCTAGGGCTATCATGCAAGATCGCCTTGGAATCATCACTCAAGAACACATGAGCTGCAGTTTCGGTACTCTGTGA 2364 0.3904 MTSSRFQFFVRWNCNSIVILASRKDTVKSLLKKLSSKTKIPIAELRLIYKGKQLHEEQILGDCGIENDETLQLLGYLRSTQCPKVWGATDFIASLILKICRGENVKDLFKIIQNHFRNNMEKAEYFDVFMFMKIPSLLVELYMSPNANNKIDADSSIKEFVQICLELKRKEVQVFYLEAVLEFCELLRGVGSKCDDLLYVFCRNGFATLLAFFGGVTAVRNYSKWRALIRGIFVCVCETLDGLLSYLDLSMTGLTSEGISCSVVWAFMKFSAPLRNGIAEKQPAFDEYENGICYEEDPSIAEVVDQYRNVFIQLLTKMDECLQFMENCFVNKEQREGGGDVIQIGQPHYLFVLKELYHISKLYSGAEEMFWGVLLRRKSMLSQLIVRYADKKDNHRWVLENMSVTDFESRRHLAMTLFPDIKHELLGYEMLIGRSEVLTESFEYISRAKPTSLEGGLFMEFKNEDATGPGVLREWFVLVCKEIFNPKNALFVACPNDHRRFFPNAASKVHPLHLKYFSFSGRMIALALKSKVHVGIYFDRVFFKQLAGNYITLEDIRDADPIMYHSCKKILEMNADYIDSDELGLTFSIEVEELGHRKVIELCPGGESLVVDSKNREKYVDLLIQNRFVTSVSGQVSHFAAGFADIISGSRLEFFRYLELEDLDWMLHGSENAISVEDWKAHTKYNGYKAIDRQITWFWEIVGRMSAKQKKVLLFFWTSVKHLPVEGFRGLDSRLFICKSIEPDNHLPSSHTCFYELCFPPYSSRAIMQDRLGIITQEHMSCSFGTL 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01139 787 Pfam Ubiquitin family 9 74 IPR000626 GO:0005515
Trre4g01139 787 SUPERFAMILY Ubiquitin-like 2 79 IPR029071 -
Trre4g01139 787 Gene3D Hect, E3 ligase catalytic domains 432 662 - -
Trre4g01139 787 ProSiteProfiles HECT domain profile. 449 787 IPR000569 GO:0004842
Trre4g01139 787 CDD HECTc 429 785 IPR000569 GO:0004842
Trre4g01139 787 SUPERFAMILY Hect, E3 ligase catalytic domain 427 772 IPR035983 GO:0004842
Trre4g01139 787 Gene3D Hect, E3 ligase catalytic domain 671 786 - -
Trre4g01139 787 Gene3D Hect, E3 ligase catalytic domain 549 631 - -
Trre4g01139 787 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 15 785 - -
Trre4g01139 787 SMART hect_3 447 785 IPR000569 GO:0004842
Trre4g01139 787 ProSiteProfiles Ubiquitin domain profile. 6 80 IPR000626 GO:0005515
Trre4g01139 787 FunFam E3 ubiquitin-protein ligase UPL5 671 786 - -
Trre4g01139 787 Gene3D - 6 74 - -
Trre4g01139 787 SMART ubq_7 6 76 IPR000626 GO:0005515
Trre4g01139 787 Pfam HECT-domain (ubiquitin-transferase) 478 779 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01139 Trre-Chr4 8859027 8864918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01139 7 78 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.247 6.99e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01139 - - mtr:11406418 1092.41