Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01138 ATGATGAAAGAGGACACTAAAATGACATCGTCTAGGTTCCAATTCTTCGTACGGTGGAACTGTAACTCCATAGTGATTCTTGCTTCAAGAAAAGACACAGTGAAATCACTTCTCAAGAAACTTTCATCCAAAACCAAAATTCCGATTGCAGAATTACGATTAATTTACAAAGGAAAACAGCTTCATGAAGAACAGATTCTCGGCGACTGCGGCATTGAAAACGATGAAACTCTTCAATTGCTTGGATACTTGAGGAGTACACAGTGTCCTAAAGTTTGGGGAGCCACAGATTTTATTGCTTCATTGATTCTCAAAATTTGTAGAGAACTTTATATGTCGCCGAATGCTAATAATAAAATCGATGCTGATTCGTCGATTAAGGAATTTGTGCAAATATGTTTAGAATTGAAGCGCAAAGAGGTGCAGGTTTTTTACCTTGAAGCTGTTTTGGAGTTTTGTGAATTGCTTAGAGGGGTAGGGTCTAAGTGTGATGATCTTTTGTATGTTTTTTGCCGGAATGGTTTTGCGACTCTGTTGGCGTTTTTTGGTGGTGTTACTGCTGTTAGGAATTATTCTAAATGGAGGGCTTTGATTCGAGGTATTTTTGTCTGTGTTTGTGAGACTTTAGATGGGTTGTTGAGTTATTTGGATTTGAGTATGACTGGTCTGACTAGCGAGGGGATTTCGTGCAGTGTTGTTTGGGCTTTTATGAAATTCTCGGCACCTTTGAGGAATGGAATTGCCGAGAAGCAACCAGCATTCGATGAATATGAGAATGGAATTTGCTATGAGGAGGATCCTTCGATTGCAGAAGTAGTTGATCAATATCGTAATGTATTTATTCAGTTATTGACCAAAATGGACGAGTGCCTTCAATTCATGGAGAATTGCTTCGTCAACAAGGAACAAAGAGAAGGGGGTGGGGATGTTATCCAAATTGGGCAGCCTCATTATCTTTTCGTCCTGAAGGAATTGTATCATATATCTAAGCTATATAGCGGTGCAGAAGAGATGTTTTGGGGAGTTTTGTTGCGTCGAAAAAGTATGCTATCTCAATTGATTGTCCGGTATGCGGATAAAAAGGATAATCATCGGTGGGTACTTGAGAATATGAGTGTGACTGATTTTGAATCTAGGAGGCATTTGGCGATGACACTATTCCCTGACATAAAACATGAATTATTGGGATATGAGATGCTTATTGGCAGGTCTGAGGTTTTGACTGAATCTTTTGAGTACATATCACGAGCTAAGCCTACATCTTTGGAGGGAGGTTTATTTATGGAATTCAAGAATGAGGATGCTACAGGACCAGGTGTTCTGAGGGAGTGGTTTGTTTTGGTGTGTAAAGAAATATTTAATCCGAAAAATGCTCTTTTTGTGGCATGTCCAAATGACCACAGGAGATTTTTTCCTAATGCTGCATCTAAGGTACATCCTCTACACCTGAAGTACTTCAGCTTCTCTGGACGTATGATTGCATTAGCTTTGAAGAGTAAGGTGCATGTGGGTATCTATTTTGATCGTGTGTTTTTCAAGCAATTGGCCGGAAACTATATTACTTTAGAAGATATTCGAGATGCCGATCCTATAATGTATCATAGCTGCAAGAAAATATTGGAGATGAATGCTGATTATATTGATTCAGATGAATTAGGACTGACATTTTCTATAGAGGTGGAAGAATTAGGACACAGGAAAGTGATTGAGCTTTGCCCTGGTGGCGAAAGCCTTGTTGTGGATAGTAAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTGACATCCGTATCTGGGCAGGTATCACATTTTGCCGCGGGTTTTGCTGATATTATATCTGGCTCAAGGCTAGAGTTCTTTCGATATTTAGAACTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATGCCATTTCTGTTGAAGATTGGAAGGCACATACTAAGTATAATGGCTATAAAGCGATTGATCGTCAGATAACTTGGTTTTGGGAGATCGTTGGGAGAATGTCAGCAAAGCAAAAGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTTCGTGGTTTGGATTCCCGTCTATTCATTTGCAAATCCATCGAACCTGATAATCACTTGCCCTCATCTCACACATGTTTTTACGAGCTGTGCTTTCCTCCATATTCTTCTAGGGCTATCATGCAAGATCGCCTTGGAATCATCACTCAAGAACACATGAGCTGCAGTTTCGGTACTCTGTGA 2271 0.3967 MMKEDTKMTSSRFQFFVRWNCNSIVILASRKDTVKSLLKKLSSKTKIPIAELRLIYKGKQLHEEQILGDCGIENDETLQLLGYLRSTQCPKVWGATDFIASLILKICRELYMSPNANNKIDADSSIKEFVQICLELKRKEVQVFYLEAVLEFCELLRGVGSKCDDLLYVFCRNGFATLLAFFGGVTAVRNYSKWRALIRGIFVCVCETLDGLLSYLDLSMTGLTSEGISCSVVWAFMKFSAPLRNGIAEKQPAFDEYENGICYEEDPSIAEVVDQYRNVFIQLLTKMDECLQFMENCFVNKEQREGGGDVIQIGQPHYLFVLKELYHISKLYSGAEEMFWGVLLRRKSMLSQLIVRYADKKDNHRWVLENMSVTDFESRRHLAMTLFPDIKHELLGYEMLIGRSEVLTESFEYISRAKPTSLEGGLFMEFKNEDATGPGVLREWFVLVCKEIFNPKNALFVACPNDHRRFFPNAASKVHPLHLKYFSFSGRMIALALKSKVHVGIYFDRVFFKQLAGNYITLEDIRDADPIMYHSCKKILEMNADYIDSDELGLTFSIEVEELGHRKVIELCPGGESLVVDSKNREKYVDLLIQNRFVTSVSGQVSHFAAGFADIISGSRLEFFRYLELEDLDWMLHGSENAISVEDWKAHTKYNGYKAIDRQITWFWEIVGRMSAKQKKVLLFFWTSVKHLPVEGFRGLDSRLFICKSIEPDNHLPSSHTCFYELCFPPYSSRAIMQDRLGIITQEHMSCSFGTL 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01138 756 Pfam Ubiquitin family 16 81 IPR000626 GO:0005515
Trre4g01138 756 Gene3D - 13 81 - -
Trre4g01138 756 SUPERFAMILY Ubiquitin-like 8 86 IPR029071 -
Trre4g01138 756 FunFam E3 ubiquitin-protein ligase UPL5 640 755 - -
Trre4g01138 756 CDD HECTc 398 754 IPR000569 GO:0004842
Trre4g01138 756 ProSiteProfiles HECT domain profile. 418 756 IPR000569 GO:0004842
Trre4g01138 756 SMART hect_3 416 754 IPR000569 GO:0004842
Trre4g01138 756 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 22 754 - -
Trre4g01138 756 Gene3D Hect, E3 ligase catalytic domains 401 631 - -
Trre4g01138 756 Pfam HECT-domain (ubiquitin-transferase) 447 748 IPR000569 GO:0004842
Trre4g01138 756 ProSiteProfiles Ubiquitin domain profile. 13 87 IPR000626 GO:0005515
Trre4g01138 756 SUPERFAMILY Hect, E3 ligase catalytic domain 396 741 IPR035983 GO:0004842
Trre4g01138 756 Gene3D Hect, E3 ligase catalytic domain 518 600 - -
Trre4g01138 756 Gene3D Hect, E3 ligase catalytic domain 640 755 - -
Trre4g01138 756 SMART ubq_7 13 83 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01138 Trre-Chr4 8859027 8864939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01138 14 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.247 7.44e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01138 - - mtr:11406418 1043.88