Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01109 ATGAGTCAACTCGGTTTTTTATTGCAGGAACCAGTAACCACCACAACTCAAACTGAGTCAAGAACGATTCTCGGTTTGTTAAGAGAAGAACAAATGGACGGTCTTGATGGTTTGCCTCGTAGAAGACGTAGCTTAAAGGAACGGTTAGGATTCATCGGTTTTGGTTGTTGTGGGACCACATGGGGATTCCGTTCTTCTTCTTCTTCTTCAGCTCAATTATCTCAGAATATTCAGCAACAAATTCCGGATATGGAAACGGATCCGGGTCATGATCCGAATATATGTGTTGGTTTAACGGCTCCGACGAGTTCGAGTTCAAGTTCGAGTATGAATCTTGCGGCGGCGTTGGCGGCGGAGAGACAACTCCGAGGAGTAGGACAAGCGGCGGAAACGAACGTTGTTGGAGTGGGGAGGATGCCGGGGACGCCGTGGAGAGTTTCGTTGATGCGGCTGTTGGAGGAAACGGAAAATGGGGATACGGTGGCGGGAGTGTCTAAGGTGGCGGAGGAGAAAGTTTGTAGTAGTGTGGCGGGGAATGATTCGGTGTGTTGCGTGTGCATGGGGAGGAATAAAGGTGCAGCGTTTATTCCATGTGGACATACTTTTTGCAGGGTTTGTTCTAGAGAGCTCTGGCTTAACCGAGGGTCTTGTCCCCTTTGTAACCGTTCAATTCTTGAAATTCTTGATATTTTTTAG 696 0.4799 MSQLGFLLQEPVTTTTQTESRTILGLLREEQMDGLDGLPRRRRSLKERLGFIGFGCCGTTWGFRSSSSSSAQLSQNIQQQIPDMETDPGHDPNICVGLTAPTSSSSSSSMNLAAALAAERQLRGVGQAAETNVVGVGRMPGTPWRVSLMRLLEETENGDTVAGVSKVAEEKVCSSVAGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01109 231 SUPERFAMILY RING/U-box 171 228 - -
Trre4g01109 231 Pfam Zinc finger, C3HC4 type (RING finger) 180 225 - -
Trre4g01109 231 PANTHER OS01G0917900 PROTEIN 14 231 - -
Trre4g01109 231 SMART ring_2 183 220 IPR001841 -
Trre4g01109 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 230 IPR013083 -
Trre4g01109 231 ProSiteProfiles Zinc finger RING-type profile. 183 221 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01109 Trre-Chr4 8544550 8545245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01109 23 231 C3H Transcription Factor Family AT4G22250 52.830 1.28e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01109 - - gmx:100804959 236.498