Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01106 ATGATAAACAACATCGGTAATGACCTTATACATTATCAAGTTACTGATCCAAATGATGATCCTATAACCCCCAAACCTGGTATGTTAAGATATGGAACTTCTGTAATTCAAGGTAAAGTGTGGATCACATTTCAAAAGGATATGAACATTAAACTCATGAAAACCCTACTCATTAGTAGTTTCACTACCATTGATGGTCGCGGCGTCAATGTCCACATTGCTAATAATGCATGTTTGATGATATTCAAGGCCACCAACATAATCATTCATAGCATTCGAATTCATCATTGCAAAGCTCAAGCACCAGGAATGGTGATGGGGCCCAATGGAAAGCTAATTCATCTGGGTTCGGTAGATGGAGATGCAATTAGATTGGTCACGGCTTCAAAAATTTGGATTGATCATAATACACTTTATGAATGTGAAGATGGTCTTCTTGATGTCACAAGAGGTTCTACTGATATTACTATATCCAATAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGGCATGATGATGGGTATCTGAGAGACCAAAACATGAAAGTTACCGTTGTGTACAATCATTTTGGACCTAACTGCAACCAACGGATGCCTAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGGTGGATGCAGTATGCCATCGGTGGAAGTATGGGACCTAGTCTCAAAAGTGAGGCTAATCTCTTCATAGCACCAAAAGTTGGGAGTAAAGAGGTCACCTGGAGAAAAAGTGGTAATACAAGTGGAGACAAATGGGAATTTCATTCTGTAAGGGACGCATTTGAAAATGGAGCCTCCTTTGCAGTAACAAAAGGAGGACGGGTGCCAAAACCAAATTATAGTAAAGAACAAAGCTTTAAAGTTGCTGATGTTAAATCTGTTAGATCATTGACAAGATCATCTGGCGTATTTCAATGCAGTAGAACATTTATATGTTGA 966 0.3861 MINNIGNDLIHYQVTDPNDDPITPKPGMLRYGTSVIQGKVWITFQKDMNIKLMKTLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSIRIHHCKAQAPGMVMGPNGKLIHLGSVDGDAIRLVTASKIWIDHNTLYECEDGLLDVTRGSTDITISNNWFREQDKVMLLGHDDGYLRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRKSGNTSGDKWEFHSVRDAFENGASFAVTKGGRVPKPNYSKEQSFKVADVKSVRSLTRSSGVFQCSRTFIC 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01106 321 Gene3D - 6 314 IPR012334 -
Trre4g01106 321 Pfam Pectate lyase 57 238 IPR002022 -
Trre4g01106 321 SUPERFAMILY Pectin lyase-like 11 290 IPR011050 -
Trre4g01106 321 PRINTS Pollen allergen Amb family signature 292 315 IPR018082 -
Trre4g01106 321 PRINTS Pollen allergen Amb family signature 55 71 IPR018082 -
Trre4g01106 321 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Trre4g01106 321 PRINTS Pollen allergen Amb family signature 261 285 IPR018082 -
Trre4g01106 321 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Trre4g01106 321 PRINTS Pollen allergen Amb family signature 18 43 IPR018082 -
Trre4g01106 321 PRINTS Pollen allergen Amb family signature 119 140 IPR018082 -
Trre4g01106 321 SMART amb_all 47 244 IPR002022 -
Trre4g01106 321 PANTHER PECTATE LYASE 18-RELATED 6 317 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01106 Trre-Chr4 8493398 8494888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01106 1 248 Polysaccharide Lyase AT5G09280 69.758 1.02e-139 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01106 K01728 - gmx:100780437 576.63