Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01104 ATGAAGCATCTCCTCAGATCAGCTCGAACATGGCGGTTACGTTTCCGTTCACTTCCTTCTTCCCAAACCCTAACTTTACACTCCTCACGCCGCATTCACTCTTCTCTCTCTCCAAAAGTGGAATCTGCGTCTGCTAAATCAAGCTATGTCTCCGATGTTTCGAGTTCGAGAGTTTTGCGAGGGGATTTGGGGATGTTTCCTGCTCTTTTGGCTGGTTTATTTGGAATTGGATTGGTGGAAACGGCTTATGCGGATGAAGCTAATGAGGATGTGCAAGAAATTGCTAAGAAAGAGCGTCAGAGAATTCAGGACTTGCTTGCAACTAAGGGAATTCAACAAGGTTCTTATCCTCGCTTCAATGTCGCTGTTAAAGGCCAGAAGGTCAGTATAAAGTTTCAAATTCCTCGGGGTTGTGAAGTTTCACAACTTATTGCAAATCTTACTGCACATCTTGGACTGAAATCAGAAGGCCATGGTGGTGGTTCAGATATGATGTTGCGTGCATGGGACAGCACGGTTGCTTGGCAACTTACCCTTACCCATCCATCAAAGCAAAAACATATTCAACAGAATGAACCGTCTTCAACAGATACAAATGCAAATGATAGAGATCTATGCATACTTATATTTCATTCTCTCATCGGCTCAGATAAAGTTGAAATTGAATTTATGAAGCAAGGGAACTTGAGTGCCGAAGAGCTTGATGCTTTCGTATCTATTTTACAACTAGCTGGAAACAGGTTTGTAGAAAGAAATCCCCTGGAAAAAAAGCCAAGGGAAGAGACCGAACAGGCGCCATCTGTAGATAAATCTATTTCTAGTCTTGAGGCCATGGGAGTAAGAACATATGGACTCAAAGAACCCATAGGTATGTCAAATGGTGAGATATCATGGGACATCATCGCCGGGTACGAGCATCAAAAGCGGGTAATAGAAGATACAGTACTATTGGCTTTGCGTAGTCCTGAAGTATATGATGATATTGCTCGAGGGACTCGGCATAAGTTTGAGTCTAACAGACCTCGAGCCGTGCTGTTTGAAGGTCCACCAGGTACAGGGAAAACCTCTTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTGCTTTATGTTCCCCTTGAGGTCGTAATGTCTGAATTCTATGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCACTAGCAAACGATCTTCCCAATGGTGCTATTATATTTTTGGATGAGATTGATTCTTTTGCTGCTGCTCGTGATAATGACATGCATGAAGCTACACGTAGAATGTTGTCAGTATTATTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTTGTCATTGCTGCCACAAATAGAAAAGAAGACCTTGATCCTGCATTAATTAGTCGGTTTGATACTATGATCGCTTTTGGTTTACCTGATCATCATAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCTAAAGCCGAACTTGATGAACTTGCAACAGTTACAGAAGATATGGCTGGAAGAGATATTAGAGATGTTTGTCTGCAAGCGGAACGATCCTGGGCATCAAAGATTATTCGGGGACAAGTATCTAAAGATGACGAACAGGCGAACCTTCCACCTTTGCAAGAATATATAGCATGTGCTACACATCGACGGGAAGCGCTGCTCAGTGCTGCTGCAAATAGGAAGCTCCGAAATTCTTCCCGCCGCAGGATAATAAGTGAATAA 1731 0.4287 MKHLLRSARTWRLRFRSLPSSQTLTLHSSRRIHSSLSPKVESASAKSSYVSDVSSSRVLRGDLGMFPALLAGLFGIGLVETAYADEANEDVQEIAKKERQRIQDLLATKGIQQGSYPRFNVAVKGQKVSIKFQIPRGCEVSQLIANLTAHLGLKSEGHGGGSDMMLRAWDSTVAWQLTLTHPSKQKHIQQNEPSSTDTNANDRDLCILIFHSLIGSDKVEIEFMKQGNLSAEELDAFVSILQLAGNRFVERNPLEKKPREETEQAPSVDKSISSLEAMGVRTYGLKEPIGMSNGEISWDIIAGYEHQKRVIEDTVLLALRSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEVVMSEFYGKSERLLGKVFSLANDLPNGAIIFLDEIDSFAAARDNDMHEATRRMLSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIAFGLPDHHNRQEIASKYAKHLSKAELDELATVTEDMAGRDIRDVCLQAERSWASKIIRGQVSKDDEQANLPPLQEYIACATHRREALLSAAANRKLRNSSRRRIISE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01104 576 ProSitePatterns AAA-protein family signature. 445 464 IPR003960 GO:0005524|GO:0016887
Trre4g01104 576 Gene3D - 474 538 - -
Trre4g01104 576 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 218 519 - -
Trre4g01104 576 Coils Coil 88 108 - -
Trre4g01104 576 SMART AAA_5 340 475 IPR003593 GO:0016887
Trre4g01104 576 CDD RecA-like_protease 307 471 - -
Trre4g01104 576 Gene3D - 295 473 IPR027417 -
Trre4g01104 576 Pfam ATPase family associated with various cellular activities (AAA) 344 472 IPR003959 GO:0005524|GO:0016887
Trre4g01104 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 519 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01104 Trre-Chr4 8472876 8479157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01104 340 540 Calmodulin-binding Proteins AT3G56690 36.842 9.32e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01104 - - gmx:100803362 873.618