Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01101 ATGGAGGGTAGTAGTAATTCTAATGGAAGTTCTTCTTATCATGTCATGAAGGCTTTTGGTGAAAACAGTGGTGGGCTATGTTCTTCAATGATGATGATGCCTTTAGTCACTTCTCATCATCAACATCATCAACAACAACATCATAATCATCCATTAAATTCCAACAATAATCCTAATAACAACAATACTAATGCAAACAACACTAGTTGTCACTTCCTTCCTATCCCTAATTCCACTAATAATAATAACAATAGTCACTACAACAATTCTATTATGCTTCAAAATAATCACCACAACAATACTACTCCTGGTTTAGGTTACTATTTCATGGATAACAACAATAATGGAAGTTCTTCTTCATCTTCTTTTGCTGTTAAAGCTAAAATCATGGCTCATCCTCACTATCATCGTCTCTTAGAAGCTTACATCAACTGTCAAAAGGTTGGAGCACCAGGTGAAGTTGTGGCTAGGTTAGAAGAAGCATGTGCATCTGCAGTGAGAATGGGTGGAGAAGCAGTTGGATCAGGTTGTATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAAGCTTATTGTGAGATGTTGATTAAGTATGAACAAGAACTCTCTAAACCCTTGAAAGAAGCCATGCTTTTTCTTCAAAGAATTGAAGTCCAGTTCAAAAATCTTACACTTTCTTCTTCTTCAGATAATATTGCTTGTAATGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATCTATACAACATGGTAGATCCTCAGGCAGAAGACAGAGAATTAAAGGGTCAGCTTTTGAGAAAGTACAGTGGATATTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAAAAAGGAAAACTACCAAAAGAGGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCTTCTGAGTCACAGAAACTGGCACTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGAAAAAGGCACTGGAAGCCATCAGAAGACATGCAGTTTGTGGTAATGGATCCAAGCCATCCACATTATTACATGGATAATAATGTTATCACCAATTCATATCCTATGGATCTATCCAACACCATGCTCTAG 1149 0.3725 MEGSSNSNGSSSYHVMKAFGENSGGLCSSMMMMPLVTSHHQHHQQQHHNHPLNSNNNPNNNNTNANNTSCHFLPIPNSTNNNNNSHYNNSIMLQNNHHNNTTPGLGYYFMDNNNNGSSSSSSFAVKAKIMAHPHYHRLLEAYINCQKVGAPGEVVARLEEACASAVRMGGEAVGSGCIGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTLSSSSDNIACNEGGDRNGSSEEDHVDLYNMVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNNVITNSYPMDLSNTML 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01101 382 CDD homeodomain 295 347 IPR001356 GO:0003677
Trre4g01101 382 SMART KNOX1_2 123 167 IPR005540 GO:0003677|GO:0005634
Trre4g01101 382 SUPERFAMILY Homeodomain-like 285 361 IPR009057 -
Trre4g01101 382 MobiDBLite consensus disorder prediction 48 85 - -
Trre4g01101 382 Pfam KNOX1 domain 124 163 IPR005540 GO:0003677|GO:0005634
Trre4g01101 382 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 43 352 - -
Trre4g01101 382 Pfam Homeobox KN domain 303 342 IPR008422 GO:0003677|GO:0006355
Trre4g01101 382 SMART HOX_1 285 350 IPR001356 GO:0003677
Trre4g01101 382 Pfam ELK domain 263 284 IPR005539 GO:0003677
Trre4g01101 382 SMART KNOX2_2 174 225 IPR005541 GO:0003677|GO:0005634
Trre4g01101 382 Gene3D - 288 350 - -
Trre4g01101 382 ProSiteProfiles 'Homeobox' domain profile. 283 346 IPR001356 GO:0003677
Trre4g01101 382 ProSitePatterns 'Homeobox' domain signature. 321 344 IPR017970 GO:0000981|GO:0006355
Trre4g01101 382 FunFam Homeobox protein knotted-1-like 2 288 350 - -
Trre4g01101 382 MobiDBLite consensus disorder prediction 38 85 - -
Trre4g01101 382 ProSiteProfiles ELK domain profile. 263 283 IPR005539 GO:0003677
Trre4g01101 382 Pfam KNOX2 domain 177 224 IPR005541 GO:0003677|GO:0005634
Trre4g01101 382 SMART ELK_2 263 284 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01101 Trre-Chr4 8443078 8449899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01101 93 382 Homeobox Transcription Factor Family AT1G62360 74.237 3.99e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre4g01101 KNOX2 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01101 - - gmx:100805837 516.924