Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01100 ATGGCACATACCCTTTTTCTTTTTCTTACCTCATTTTCTTTGATCCTTTCTTTTTTTCATCCTCTTTCTCTTGCTAACACTGACCCTTCTGATGTTCAAGCTCTTGAGGTTATGTACAATGCATTGAATAATCCAACTGAATTAAAGGGTTGGAAAATTGGTGGTGGTGATCCATGTGGAGATTCATGGAAAGGGATTACTTGTGAAGGTTCATCTGTTGTTTCTATTGATCTTTCTGGTTTAGGACTCCATGGAACTCTTGGATACTTGCTTTCAGACCTTATGTCACTTAGAAAGCTTGACTTGAGTGGCAACAAGATCCATGATCAAATTCCCTATCAGTTGCCACCAAATCTTACAAGCCTAAATCTTGCGGGAAATAACTTAACCGGAAATCTTCCGTATTCGATTGCTATCATGGTTTCACTCAATTATCTGAATGTGAGCAATAATGCGCTATCCATGTCAATCGGCGACATTTTTGCTAATCATTCGCGTCTTGATACCCTGGATCTATCATTTAATAACTTTTCCGGGGATCTTCCACCTTCATTTGGTTCACTGTCAAATCTCTCTTCTCTTTTCTTGCAGAAGAATCAGTTGACTGGTTCTCTTAGTGTTCTTGTTGGTTTGCCGTTGGATAATTTAAATGTTGCAAACAATAATTTCAGTGGATGGATACCTCATGAGCTTAAATCTATCGATAATTTCATATATGATGGAAATTCTTTCAATGATGGCCCTGCACCTCCTTCGCCAGAATCTACTTCGTCTCCACCTAGTAAACCACATAAACCTAATCCTCACTCCGGGTCTGGTTCACATACTAAAACACAGGGTTCTGATGATCGAAATTCCGATGGCGATAAGGGTACATCAGCCGGGGCCATTGTTGGGATTGTTTTAGGTTCAGTGTTAGTGTTTTCTGTTATTCTCGTTGCTCTTGTTTTCTGTATCCGAAAACTAAAAGGGAAGGAAAAGGGTGCAAGAACTTCTAACGGGAGCGTTCCTCCCGGAATAATCAACGTAACTCCTCAAATGCAAGAGCAAAGGGTGAAAAGTGCTGCCGTTATTACAGATCTCAAACCTCGTCCGCCTGCAGAAAATGTGACGATGGATAGGATGGCTATAAAAAGTGGATGTGGATCAGTAAAGCAGATGAGGTCTCCCATCACTTCCACGTCGTACACAGTTGCTACGCTTCAGAGTGCAACAAATAGCTTCAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGTCGAGTTTACCGAGCTGAATTCCCAAATGGGAAGGTAATGGCCGTTAAGAAGATTGACAATGCAGCACTGTCCTTACAAGAGGAAGACAATTTTCTTGAAGCTATTTCGAATATGTCACGCTTGCGGCATCCGAATGTTGTTACACTGGCTGGATATTGTGCAGAACATGGCCAACGGCTTCTAATTTATGAATATATTGGAAATGGAAATCTGCACGACATGCTCCATTTTGCTGAAGATAGCAGTAAAGCTTTACCTTGGAATGCCCGTGTACGGATAGCTCTTGGCACAGCCCGGGCCTTAGAGTATTTGCACGAAGTTTGCTTGCCTTCGGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTCGACGAGGAGCTCAATCCTCACCTGTCTGACTGCGGCTTAGCATCCCTTACGCCAAACACCGAGCGACAGGTATCATCAACTCAAATGGTCGGCTCATTCGGTTATAGTGCTCCCGAGTTTGCATTATCAGGAGTATACACCGTAAAAAGCGATGTTTACAGCTTTGGAGTTGTTATGCTGGAACTTCTAACTGGTCGAAAGCCACTTGACAGTTCGAGAGTTAGAGCTGAGCAATCACTTGTGAGGTGGGCAACACCGCAGCTCCATGATATCGATGCCTTGTCCAAAATGGTCGATCCTTGTTTGAATGGCATGTATCCTGCAAAATCGTTGTCACGCTTCGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCAGAATTTCGACCTCCAATGTCCGAGGTGGTGCAAGCATTGGTACGATTAGTACAAAGAGCGAGCGTGGTTAAAAGGAGACCAAGTGATGAATCTGGTTTTGGTCACAAGACACCGGACCATGAGTCCATGGACATGTCATTTTAA 2154 0.4276 MAHTLFLFLTSFSLILSFFHPLSLANTDPSDVQALEVMYNALNNPTELKGWKIGGGDPCGDSWKGITCEGSSVVSIDLSGLGLHGTLGYLLSDLMSLRKLDLSGNKIHDQIPYQLPPNLTSLNLAGNNLTGNLPYSIAIMVSLNYLNVSNNALSMSIGDIFANHSRLDTLDLSFNNFSGDLPPSFGSLSNLSSLFLQKNQLTGSLSVLVGLPLDNLNVANNNFSGWIPHELKSIDNFIYDGNSFNDGPAPPSPESTSSPPSKPHKPNPHSGSGSHTKTQGSDDRNSDGDKGTSAGAIVGIVLGSVLVFSVILVALVFCIRKLKGKEKGARTSNGSVPPGIINVTPQMQEQRVKSAAVITDLKPRPPAENVTMDRMAIKSGCGSVKQMRSPITSTSYTVATLQSATNSFSQEFIIGEGSLGRVYRAEFPNGKVMAVKKIDNAALSLQEEDNFLEAISNMSRLRHPNVVTLAGYCAEHGQRLLIYEYIGNGNLHDMLHFAEDSSKALPWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLASLTPNTERQVSSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRVRAEQSLVRWATPQLHDIDALSKMVDPCLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFGHKTPDHESMDMSF 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01100 717 Gene3D Transferase(Phosphotransferase) domain 1 486 704 - -
Trre4g01100 717 CDD JMTM_APP_like 291 321 - -
Trre4g01100 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 486 697 - -
Trre4g01100 717 SUPERFAMILY Protein kinase-like (PK-like) 384 683 IPR011009 -
Trre4g01100 717 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Trre4g01100 717 ProSiteProfiles Protein kinase domain profile. 408 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01100 717 MobiDBLite consensus disorder prediction 697 717 - -
Trre4g01100 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Trre4g01100 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 373 485 - -
Trre4g01100 717 SUPERFAMILY L domain-like 28 233 - -
Trre4g01100 717 Gene3D Phosphorylase Kinase; domain 1 370 485 - -
Trre4g01100 717 Pfam Protein tyrosine and serine/threonine kinase 413 683 IPR001245 GO:0004672|GO:0006468
Trre4g01100 717 MobiDBLite consensus disorder prediction 243 290 - -
Trre4g01100 717 CDD STKc_IRAK 414 686 - -
Trre4g01100 717 MobiDBLite consensus disorder prediction 252 266 - -
Trre4g01100 717 Gene3D Ribonuclease Inhibitor 28 258 IPR032675 -
Trre4g01100 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 687 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01100 Trre-Chr4 8434038 8438702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01100 140 717 Strubbelig Receptor Gene Family AT4G22130 70.984 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre4g01100 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01100 - - gmx:100781455 1126.31