Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01096 ATGTCCAAAGGAGCCATTGCTGGCATAGTTGTTGGAGGAGCTTTTGGGATCTTACTTTTGGCACTCATTCTATATATTATGTTCTATAGAAGAAAACAAGTGGCTGAAGTCACCCTTCTACCAGTCCCAGGAGGAGCAATTGAAGATCAATATAGTCAAGTCCAACATGGTTGTAGAAGCAGCATAGATAAAGCATCAGAATCTACTACTATTGCATCTCCAAGGTTGACAGGCATTACAGTTGACAAGTCTGTTGAGTTTTCATATGAGGAGTTAGCCAAAGCTACCGATAGCTTTAGCGAGGCTAATATAATCGGTCGAGGTGGATTTGGATCTGTATACTATGCTGAGCTTCGAAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAAAGAATTTTTAGCTGAACTAAAGGTTCTGACACATGTCCATCACTTGAACTTGGTGCGGCTAATTGGATATTGTGTTGAGGGCTCTTTATTTTTGGTTTATGAGTACATTGAGAATGGAAATTTAAGTCAACATTTGCGCGGCACAGAGAAGGATCCATTATCATGGCCAGCTAGAGTTCAAATTGCATTAGACTCAGCAAGAGGATTGGAATACATTCATGAGCATACAGTTCCTGTCTACATTCATCGAGATGTTAAATCAGCAAACATTTTGATCGACAAAAACTTCCGCGGAAAGGTTGCAGATTTTGGTTTGACAAAATTGACCGAATATGGTAGTTCCTCATTACAAACACGCCTTGTTGGGACATTTGGTTATATGCCTCCTGAATATGCACAATATGGTGAAGTTTCTCCCAAAATAGATGTATATGCATTTGGAGTTGTTCTGTTTGAGCTTATATCTGGCAAACAAGCTATTGTGAAGACAAATGAGCCTCAAAGTGAATCAAAAGGACTAGTTGCACTGTTTGAAGAAGTTCTTGTTCTGCCAGACCCAAAAGAAGATCTTGGTAAATTTGTTGACACTAGACTTGGTGAAAATTACCCTGTTGACTCAGTATTTAAGATGTGCCAGCTTGCAAAAGCATGTACACATGAAAATGCTCAACTTAGACCAAGCATGAGATCAATTGTTGTTGCCTTAATGACACTTTCATCAGCAGCTGAGGATTGGGATGTTGGATCCTTCTATGAAAACCAAGCATTAGTACATTTAATGTCTGGAAGGTAG 1194 0.392 MSKGAIAGIVVGGAFGILLLALILYIMFYRRKQVAEVTLLPVPGGAIEDQYSQVQHGCRSSIDKASESTTIASPRLTGITVDKSVEFSYEELAKATDSFSEANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGTEKDPLSWPARVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLFELISGKQAIVKTNEPQSESKGLVALFEEVLVLPDPKEDLGKFVDTRLGENYPVDSVFKMCQLAKACTHENAQLRPSMRSIVVALMTLSSAAEDWDVGSFYENQALVHLMSGR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01096 397 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Trre4g01096 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Trre4g01096 397 ProSiteProfiles Protein kinase domain profile. 99 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01096 397 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 383 IPR044812 GO:0019199|GO:0045087
Trre4g01096 397 FunFam PTI1-like tyrosine-protein kinase 3 170 383 - -
Trre4g01096 397 Gene3D Phosphorylase Kinase; domain 1 72 169 - -
Trre4g01096 397 FunFam LysM receptor kinase 2 78 169 - -
Trre4g01096 397 Pfam Protein tyrosine and serine/threonine kinase 103 368 IPR001245 GO:0004672|GO:0006468
Trre4g01096 397 Gene3D Transferase(Phosphotransferase) domain 1 170 381 - -
Trre4g01096 397 SMART serkin_6 99 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01096 397 SUPERFAMILY Protein kinase-like (PK-like) 77 369 IPR011009 -
Trre4g01096 397 CDD STKc_IRAK 105 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01096 Trre-Chr4 8397491 8400403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01096 4 397 Receptor kinase-like Gene Family AT3G21630 62.183 1.06e-166 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre4g01096 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01096 - K13429 gmx:100802308 633.254