Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01094 ATGCAGCCAAATGAGTTTACCAAGAAATATAGTTTTATAACCAAATTCAATCCCACCACCGAAACTACTATTCCCACATCTGCAACTACTCCCACCATAACCAACCACACTGCCACTATCCCGATCACCACTGCCACCACCTTCACTAACCCAACAATCACTATCAGCACCCATACCACCACCCCTGCTACACATCCGCCACAACAAAAACCCCATTCAAGAATAAGAAAAAATAAAAATCTTGTGACATCAGTGTCCTATGTGAAAGAGGAAAATCTTTCAAAAGATATGTGGCAATGGAGAAAGTATGGACGAAAACCCATCAAAGGGTCACCATATTCAAGGAACTACTACAAATGCAGCAGTTGCAATCATTGTCCAGCTAGAAAACATGTTGAAAAAAGCGAAACTGATGAGAAGACTTATGTTGTAACGTATCGAGGAGAGCATAACCACCCAGAACCAGAAGTTAAGCAAAACTCCGATACTGGTACCTCTCAGCACAAGTCATCGGATGCTAGATTACCCGTTGTCGGACATGCTGGTTCATCCCAAAACTTCGAAAGCTTGGGTTCTCCTAATGTGGCGATGGTGCAGTTTGATCATTCGGAGAGTAACAATGCTCAATCACATGTTGTCGGAGAAGTTGGACCGTCCCATAATGTGCAAAAAATAGACCCACATATCAGGATGATGTTACAACGTGATGAGCCACAGAGAAGCAATGCTCATATTTTTCCTGGTGAATTAGAAATCTCTTCTGAAACAAATTTTATTGGAAGCTTTAATGACGATGATGATGATATTTTGATATCAAACATATCAAATTTGTCAGATGATTTCTTCCTGGACTTCGATCATCTCAACAACGATTCTGTATTACCTTAG 888 0.4077 MQPNEFTKKYSFITKFNPTTETTIPTSATTPTITNHTATIPITTATTFTNPTITISTHTTTPATHPPQQKPHSRIRKNKNLVTSVSYVKEENLSKDMWQWRKYGRKPIKGSPYSRNYYKCSSCNHCPARKHVEKSETDEKTYVVTYRGEHNHPEPEVKQNSDTGTSQHKSSDARLPVVGHAGSSQNFESLGSPNVAMVQFDHSESNNAQSHVVGEVGPSHNVQKIDPHIRMMLQRDEPQRSNAHIFPGELEISSETNFIGSFNDDDDDILISNISNLSDDFFLDFDHLNNDSVLP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01094 295 MobiDBLite consensus disorder prediction 158 172 - -
Trre4g01094 295 SUPERFAMILY WRKY DNA-binding domain 88 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01094 295 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 55 291 IPR044810 GO:0003700
Trre4g01094 295 SMART WRKY_cls 94 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01094 295 ProSiteProfiles WRKY domain profile. 89 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01094 295 MobiDBLite consensus disorder prediction 149 183 - -
Trre4g01094 295 Pfam WRKY DNA -binding domain 95 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01094 295 MobiDBLite consensus disorder prediction 54 68 - -
Trre4g01094 295 Gene3D WRKY domain 79 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01094 295 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01094 Trre-Chr4 8387980 8389157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01094 72 170 WRKY Transcription Factor Family AT5G52830 55.556 2.70e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g01094 WRKY 7.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01094 - - tpra:123896298 288.5