Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01093 ATGGAAAATGATTGGGACATCTCTTCTATTGTGCGTAGCTGCAAAGCTACCACCTTTACTAATCCTTCAACCATTTGTGAAACTCCACCTCAAAACCTAACTACCACCACCTCCACCCATAGTATCATAGCCCCTATAAACACCACACCATCTTGCTTAGAAGATTTCATTTTTAACCGAGAAAATAGCTCAATTACAAATACAAACACAGTGGACAATGATTGGGATCTATCTTCTATTGTGCGTCGCTGCAAAGTTACCACCTTTACTAATCCTTCCACCGTTTGTGAAACTCCGCCTCAAAACCTAACCACCGTGGTCACCACCACAGCCACAAATAGCCTTGTACCCCTTATAAACACCACACCATCTTGTTTTCCCGATTTTACTTTTAACCAAGAAAAGAGTCCAGTTTCTTTTACCTCACATAAATCAAATGACTTCGCAGATCTGAACAAATTGAGGGTCAATTTCAATTCCACCACTCATATCCCCACACCCACTACCGCCAATATCCCAATCTCTGTTACCAACACAACCTCTTCCCTCACCACCACCACTTTCTCCACCCACATCACCCCAAATATCATCACAAACATTAACACTAACGTTCATGTGTCCAATCAAAATCCAACCTTTTTTAATTTTTCAACACCCATCAAACAAAATCAAATGCAGCCAAATGAGTTTACCAAGAAATATAGTTTTATAACCAAATTCAATCCCACCACCGAAACTACTATTCCCACATCTGCAACTACTCCCACCATAACCAACCACACTGCCACTATCCCGATCACCACTGCCACCACCTTCACTAACCCAACAATCACTATCAGCACCCATACCACCACCCCTGCTACACATCCGCCACAACAAAAACCCCATTCAAGAATAAGAAAAAATAAAAATCTTGTGACATCAGTGTCCTATGTGAAAGAGGAAAATCTTTCAAAAGATATGTGGCAATGGAGAAAGTATGGACGAAAACCCATCAAAGGGTCACCATATTCAAGGAACTACTACAAATGCAGCAGTTGCAATCATTGTCCAGCTAGAAAACATGTTGAAAAAAGCGAAACTGATGAGAAGACTTATGTTGTAACGTATCGAGGAGAGCATAACCACCCAGAACCAGAAGTTAAGCAAAACTCCGATACTGGTACCTCTCAGCACAAGTCATCGGATGCTAGATTACCCGTTGTCGGACATGCTGGTTCATCCCAAAACTTCGAAAGCTTGGGTTCTCCTAATGTGGCGATGGTGCAGTTTGATCATTCGGAGAGTAACAATGCTCAATCACATGTTGTCGGAGAAGTTGGACCGTCCCATAATGTGCAAAAAATAGACCCACATATCAGGATGATGTTACAACGTGATGAGCCACAGAGAAGCAATGCTCATATTTTTCCTGGTGAATTAGAAATCTCTTCTGAAACAAATTTTATTGGAAGCTTTAATGACGATGATGATGATATTTTGATATCAAACATATCAAATTTGTCAGATGATTTCTTCCTGGACTTCGATCATCTCAACAACGATTCTGTATTACCTTAG 1560 0.4083 MENDWDISSIVRSCKATTFTNPSTICETPPQNLTTTTSTHSIIAPINTTPSCLEDFIFNRENSSITNTNTVDNDWDLSSIVRRCKVTTFTNPSTVCETPPQNLTTVVTTTATNSLVPLINTTPSCFPDFTFNQEKSPVSFTSHKSNDFADLNKLRVNFNSTTHIPTPTTANIPISVTNTTSSLTTTTFSTHITPNIITNINTNVHVSNQNPTFFNFSTPIKQNQMQPNEFTKKYSFITKFNPTTETTIPTSATTPTITNHTATIPITTATTFTNPTITISTHTTTPATHPPQQKPHSRIRKNKNLVTSVSYVKEENLSKDMWQWRKYGRKPIKGSPYSRNYYKCSSCNHCPARKHVEKSETDEKTYVVTYRGEHNHPEPEVKQNSDTGTSQHKSSDARLPVVGHAGSSQNFESLGSPNVAMVQFDHSESNNAQSHVVGEVGPSHNVQKIDPHIRMMLQRDEPQRSNAHIFPGELEISSETNFIGSFNDDDDDILISNISNLSDDFFLDFDHLNNDSVLP 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01093 519 ProSiteProfiles WRKY domain profile. 313 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01093 519 Gene3D WRKY domain 303 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01093 519 MobiDBLite consensus disorder prediction 278 299 - -
Trre4g01093 519 MobiDBLite consensus disorder prediction 373 403 - -
Trre4g01093 519 Pfam WRKY DNA -binding domain 319 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01093 519 MobiDBLite consensus disorder prediction 278 292 - -
Trre4g01093 519 SMART WRKY_cls 318 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01093 519 MobiDBLite consensus disorder prediction 382 396 - -
Trre4g01093 519 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 515 IPR044810 GO:0003700
Trre4g01093 519 SUPERFAMILY WRKY DNA-binding domain 312 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01093 Trre-Chr4 8387308 8389157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01093 296 394 WRKY Transcription Factor Family AT5G52830 55.556 5.72e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g01093 WRKY 1.7e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01093 - - tpra:123896298 514.227