Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01085 ATGGAAAATGATTGGGATCTATCTTCTATTGTTCGTCGCTGCAAAGTTACCACCTTTACTAATCCTTCCACCTTTTGTGAAACTCCACCTCAAAACCTAACCACCACCATCACCTCCACCACCAATAGTATTATATCCCCTATAAACACCTCACCATCTTGCTTTGAAGATTATTTTATTTTTAACCAAGAAATTAGCCCGATTGCAAATAAACACACAATGGAAAATGATTGGGATCTATCTTCTATTGTGCGTCGCTGCAAAGTTACCACCTTTACTAATCCTTCCACCTTTTGTGAAACTCCACCTCAAAAGCTAGCCACCATGGTCACCACAACAACCACAAATAGCCTTGTATCCCCTATAAACACAACACCATCTTGTTTTCCTGATTTTACTTTTAACCAAGAAAATAGTCCAAATTCTTTTACCTCACATAAACCAAATAACTTCACAAATCTGAACAAATTGAGGGTCAATTTCAATTCCACCACCCATATCCCCACCCCCACTACTACCAGTATCCCAATCACTATTACAACCGCAACCTCTTCCCTCACCACCACCACTTTCCCAACCCACACTAACGTTCAAATATCCAATCAAAATTCTAGCTTTTTTGATTTTTCAACATCCATCAAACAACATCAAATGCAACCAAATAAGTTTACCCAAAAAAATAGTTTTATGTCCAAATTGGATTCCACCACCTCAATCCCAACCCTCGGAACTACTTTGACCATAAAAAATAAAAATCATGTGACATCGGTGTGCCATGTGAAGGAGGACAAACTTTCAGAAGATAAGTGGCGATGGAAAAAGTATCGACGAAAACCCATTAAAGGGTCACCACATTTAAGGAGCTACTACAAATGTAGCAGTTTCAAAGATTGTCCGGCTAGAAAACAATCTGAAAAAAGTGAAACTGAAGAGAACACTTATGTTGTAACATATCGAGGAAAGCATAATCACCCAAAACTAGAAGTTAAACAAAACTCTAATAATGGGACCGCTCGAAACAAGTCATCAGAGGCTGGATTACCCGTTGTCGGACAAGCTGGATCATCCCAAAACTCTGAAAACTTGGGTTATCCTAATGTGGTGATGGTGCAGTTTGATCAATCGGAGAGTAACAACGCTCAAGTTATCGAAGGTCATTCAAAAATTACTAATTCGGAAATCGAACTTAATGAGAGTCAATCACATGTTGTCAGCGAAGCTGGATCGTCGCAAAATGTTCAAAAATTAGATTCACATAACAAAATGATGTTACAACATGATGAGCCGGAGAGAAGAAATGCTCAGATTTTATTGAAAACTCTAATAATAATGATGACATTTTGA 1344 0.3817 MENDWDLSSIVRRCKVTTFTNPSTFCETPPQNLTTTITSTTNSIISPINTSPSCFEDYFIFNQEISPIANKHTMENDWDLSSIVRRCKVTTFTNPSTFCETPPQKLATMVTTTTTNSLVSPINTTPSCFPDFTFNQENSPNSFTSHKPNNFTNLNKLRVNFNSTTHIPTPTTTSIPITITTATSSLTTTTFPTHTNVQISNQNSSFFDFSTSIKQHQMQPNKFTQKNSFMSKLDSTTSIPTLGTTLTIKNKNHVTSVCHVKEDKLSEDKWRWKKYRRKPIKGSPHLRSYYKCSSFKDCPARKQSEKSETEENTYVVTYRGKHNHPKLEVKQNSNNGTARNKSSEAGLPVVGQAGSSQNSENLGYPNVVMVQFDQSESNNAQVIEGHSKITNSEIELNESQSHVVSEAGSSQNVQKLDSHNKMMLQHDEPERRNAQILLKTLIIMMTF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01085 447 Pfam WRKY DNA -binding domain 267 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01085 447 SMART WRKY_cls 266 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01085 447 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 77 406 IPR044810 GO:0003700
Trre4g01085 447 SUPERFAMILY WRKY DNA-binding domain 260 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01085 447 ProSiteProfiles WRKY domain profile. 261 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01085 447 MobiDBLite consensus disorder prediction 326 362 - -
Trre4g01085 447 Gene3D WRKY domain 251 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01085 Trre-Chr4 8329900 8331647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01085 256 342 WRKY Transcription Factor Family AT5G52830 52.874 1.22e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g01085 WRKY 6.6e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01085 - - tpra:123896298 347.821