Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01083 ATGCAACCAAATAAGTTTACTGAAAAAAATAGTTTTATGTCCAAATTGAATCCTACCACCTCTATCCCAACCCTCAGAACTACATTGACCATGTCTGCCATCACTCCTCCCACCACCTTCACTACCCCGACAACTACTATCAGCACCCCAACCATCACCCATGCACATCGACAACAACCAAAACGCCAATCAAGAAAAAGAAAAAATAAAAATCATGTGACATCGGTGTGCCATGTGAAGGAGGATAAACTTTCAGAAGATAAGTGGCGATGGAAAAAGTATGGACGAAAACCCATTAAAGGGTCACCACATTTAAGGAGTTACTACAAAAGTAGCAGTTTCAAAGATTGTCCAGCTAGAAAACAATCTGAAAAAAGTGAAACTGAAGAGAACACTTATGTTGTAACATATCGAGGAAAGCACAATCACCCAAAACCAGAAGTTAAACAAAATTCTGATAATGGGACCGCTCGAAACAAGTCATCAGAGGCTGGATTACCCGTTGTCGGACAAGCTGGATCATCCCAAAACTCCGAAAGCTGGATCTTCCTCAAGAATGGCCATGTACGAACGAGGCCAACACTGTTGATAATGAAGAAGTGA 603 0.4129 MQPNKFTEKNSFMSKLNPTTSIPTLRTTLTMSAITPPTTFTTPTTTISTPTITHAHRQQPKRQSRKRKNKNHVTSVCHVKEDKLSEDKWRWKKYGRKPIKGSPHLRSYYKSSSFKDCPARKQSEKSETEENTYVVTYRGKHNHPKPEVKQNSDNGTARNKSSEAGLPVVGQAGSSQNSESWIFLKNGHVRTRPTLLIMKK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01083 200 Pfam WRKY DNA -binding domain 86 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01083 200 MobiDBLite consensus disorder prediction 134 148 - -
Trre4g01083 200 SUPERFAMILY WRKY DNA-binding domain 79 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01083 200 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 31 175 IPR044810 GO:0003700
Trre4g01083 200 MobiDBLite consensus disorder prediction 96 177 - -
Trre4g01083 200 ProSiteProfiles WRKY domain profile. 80 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01083 200 MobiDBLite consensus disorder prediction 1 75 - -
Trre4g01083 200 SMART WRKY_cls 85 145 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01083 200 MobiDBLite consensus disorder prediction 58 73 - -
Trre4g01083 200 Gene3D WRKY domain 64 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01083 200 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01083 Trre-Chr4 8323257 8324155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01083 63 161 WRKY Transcription Factor Family AT5G52830 54.545 1.35e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g01083 WRKY 1.4e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01083 - - tpra:123896298 248.825