Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01080 ATGCAACCAAATAAGTTTACCGAAAAAAATAGTTTTATGTCCAAATTGAATCCCACCACCTCTATCCCAACCCTAAGAACTACTTTGACCATGTCTGCCATCACTCCTCCCACCACCTTCACTACCCCGACAACTACTATCAGCACCCCAACCATCACCCATGCACATCGACAACAACCAAAACGCCAATCAAGAAAAAGAAAAAATAAAAATCATGTGACATCAGTGTGCCATGTGAAGGAGGATAAACTTTCAGAAGATAAGTGGCGATGGAAAAAATATGGACGAAAACCCATTAAAGGGTCACCACATTTAAGGAGCTACTACAAATGTAGCAGTTTCAAAGATTGTCCAGCTAGAAAACAATCTGAAAAAAGTGAAACTGAAGAGAACACTTATGTTGTAACATATCGAGGAAAGCACAATCACCCAAAACCAGAAGTTAAACAAAACTCTGATAATGGGACCGCTCGAAACAAGTCATCAGAGGCTGGATTACCTGTTGTCGGACAAGCTGGATCATCCCAAAACTCTGAAAACTTGCGTTATCCTAATGTGGTGATGGTACAGTTTGATCAATCGGAGAGTAACAATGCTCAAGTTATCGACGGTCATTTAAAAATAACTAATTCGGAAATCGAACTTAATGAGAGTCAATCACATGTTGTCAGCGAAGCTGGATCGTCGCAAAATGTTCAAAAATTAGATTCATATAACAAAATGATGTTACAACATGATGAGCCGGAGAGAAGAAATGCTAAGATTTTTCTTGGTGAATTAGAAATCCCTTATTCCGAAACAGATTTTATTGAAAGCTCTAATAACGATGATGACATTTTGATACCAAATATGTCAGCTATGGTGGAAGATTTCCTACTGGACATCAATCTCCTCAATGGTGGTTCTATAATGGTTTGA 918 0.3845 MQPNKFTEKNSFMSKLNPTTSIPTLRTTLTMSAITPPTTFTTPTTTISTPTITHAHRQQPKRQSRKRKNKNHVTSVCHVKEDKLSEDKWRWKKYGRKPIKGSPHLRSYYKCSSFKDCPARKQSEKSETEENTYVVTYRGKHNHPKPEVKQNSDNGTARNKSSEAGLPVVGQAGSSQNSENLRYPNVVMVQFDQSESNNAQVIDGHLKITNSEIELNESQSHVVSEAGSSQNVQKLDSYNKMMLQHDEPERRNAKIFLGELEIPYSETDFIESSNNDDDILIPNMSAMVEDFLLDINLLNGGSIMV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01080 305 MobiDBLite consensus disorder prediction 34 73 - -
Trre4g01080 305 MobiDBLite consensus disorder prediction 34 57 - -
Trre4g01080 305 SMART WRKY_cls 85 145 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01080 305 Gene3D WRKY domain 69 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01080 305 ProSiteProfiles WRKY domain profile. 80 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01080 305 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 32 279 IPR044810 GO:0003700
Trre4g01080 305 MobiDBLite consensus disorder prediction 58 73 - -
Trre4g01080 305 MobiDBLite consensus disorder prediction 136 179 - -
Trre4g01080 305 Pfam WRKY DNA -binding domain 86 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01080 305 SUPERFAMILY WRKY DNA-binding domain 79 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01080 Trre-Chr4 8300484 8301634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01080 63 161 WRKY Transcription Factor Family AT5G52830 55.556 6.39e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g01080 WRKY 4.8e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01080 - - tpra:123896298 417.927