Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01079 ATGGAAAATAATTGGGACCTCTCTTCTATTGTGCGTAGCTGCAAAGCTACCACTTTTACTAATTCTTCCACCTTTTGTGAAACTTCACCTCAAAATCTATCCACCACCAATAGTATTATATCCCGTATAAACACCACACCATCTTGCTTTGAAGATTTTATTTTTAACCAAGAAAATAGCCCAATTGCAACAACACACACAATGGAAAATGATTGGGATCTATCTTCTATTGTCCGTCGCTACAAAGTTACCACCTTTACTAATCCTTCCACCATTTGTGAAACTCCACCTCAAAACCTAACCACCACCATCACCTCCACCACCAATAGTATTATATCCCCTATAAACACCTCACCATCTTGCTTTGAAGATTTTATTTTTAACCAAGAAATTAGCCCGATTGCAAATAAACACACAATGGAAAATGATTGGGATCTATCTTCTATTGTGCGTCGCTGCAAAGTTCCCACCTTTACTAATCCTTCCACCTTTTGTGAAACTCCACCTCAAAACCTAGCCACCATGGTCACCACAACGACCACAAATAGCCTTGTATCCCTTATAAACACAACACCATCTTGTTTTCCTGATTTTACTTTGAACCAAGAAAATAGTTCAAATTCTTTTACCTCACATAAACCAAATAACTTCACAAATCTGAACAAATTAAGGGTCAATTTCAATTCCACCACCCATATCCCCACTACTACCAGTATCTCAATCACTATTACAACCGCAACCTCTTCCCTCACCACCACCACTTTCCCAACCCACACTAACGTTCAAATATCCAATCAAAATTCTAGCTTTTTTGATTTTCCAACATCCATCAAACAACATCAAATGCAACCAAATAAGTTTACCGAAAAAAATAGTTTTATGTCCAAATTGAATCCCACCACCTCTATCCCAACCCTAAGAACTACTTTGACCATGTCTGCCATCACTCCTCCCACCACCTTCACTACCCCGACAACTACTATCAGCACCCCAACCATCACCCATGCACATCGACAACAACCAAAACGCCAATCAAGAAAAAGAAAAAATAAAAATCATGTGACATCAGTGTGCCATGTGAAGGAGGATAAACTTTCAGAAGATAAGTGGCGATGGAAAAAATATGGACGAAAACCCATTAAAGGGTCACCACATTTAAGGAGCTACTACAAATGTAGCAGTTTCAAAGATTGTCCAGCTAGAAAACAATCTGAAAAAAGTGAAACTGAAGAGAACACTTATGTTGTAACATATCGAGGAAAGCACAATCACCCAAAACCAGAAGTTAAACAAAACTCTGATAATGGGACCGCTCGAAACAAGTCATCAGAGGCTGGATTACCTGTTGTCGGACAAGCTGGATCATCCCAAAACTCTGAAAACTTGCGTTATCCTAATGTGGTGATGGTACAGTTTGATCAATCGGAGAGTAACAATGCTCAAGTTATCGACGGTCATTTAAAAATAACTAATTCGGAAATCGAACTTAATGAGAGTCAATCACATGTTGTCAGCGAAGCTGGATCGTCGCAAAATGTTCAAAAATTAGATTCATATAACAAAATGATGTTACAACATGATGAGCCGGAGAGAAGAAATGCTAAGATTTTTCTTGGTGAATTAGAAATCCCTTATTCCGAAACAGATTTTATTGAAAGCTCTAATAACGATGATGACATTTTGATACCAAATATGTCAGCTATGGTGGAAGATTTCCTACTGGACATCAATCTCCTCAATGGTGGTTCTATAATGGTTTGA 1761 0.3827 MENNWDLSSIVRSCKATTFTNSSTFCETSPQNLSTTNSIISRINTTPSCFEDFIFNQENSPIATTHTMENDWDLSSIVRRYKVTTFTNPSTICETPPQNLTTTITSTTNSIISPINTSPSCFEDFIFNQEISPIANKHTMENDWDLSSIVRRCKVPTFTNPSTFCETPPQNLATMVTTTTTNSLVSLINTTPSCFPDFTLNQENSSNSFTSHKPNNFTNLNKLRVNFNSTTHIPTTTSISITITTATSSLTTTTFPTHTNVQISNQNSSFFDFPTSIKQHQMQPNKFTEKNSFMSKLNPTTSIPTLRTTLTMSAITPPTTFTTPTTTISTPTITHAHRQQPKRQSRKRKNKNHVTSVCHVKEDKLSEDKWRWKKYGRKPIKGSPHLRSYYKCSSFKDCPARKQSEKSETEENTYVVTYRGKHNHPKPEVKQNSDNGTARNKSSEAGLPVVGQAGSSQNSENLRYPNVVMVQFDQSESNNAQVIDGHLKITNSEIELNESQSHVVSEAGSSQNVQKLDSYNKMMLQHDEPERRNAKIFLGELEIPYSETDFIESSNNDDDILIPNMSAMVEDFLLDINLLNGGSIMV 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01079 586 MobiDBLite consensus disorder prediction 339 354 - -
Trre4g01079 586 ProSiteProfiles WRKY domain profile. 361 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01079 586 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 559 IPR044810 GO:0003700
Trre4g01079 586 Pfam WRKY DNA -binding domain 367 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01079 586 MobiDBLite consensus disorder prediction 315 354 - -
Trre4g01079 586 MobiDBLite consensus disorder prediction 315 338 - -
Trre4g01079 586 SMART WRKY_cls 366 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01079 586 MobiDBLite consensus disorder prediction 417 460 - -
Trre4g01079 586 Gene3D WRKY domain 351 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01079 586 SUPERFAMILY WRKY DNA-binding domain 360 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01079 Trre-Chr4 8300484 8302477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01079 344 442 WRKY Transcription Factor Family AT5G52830 55.556 3.57e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g01079 WRKY 1.3e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01079 - - tpra:123896298 636.721