LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g01075	ATGGACAAAGGTTGGGGACTTGCTCTTGATACTTCTTCATCTTCATCTCCAATACCAATTTCATCTTTGAACTCTTTCTCAAGACATAACAACAACGATAATAATAATAATAATAGAATGTTTCCTATCTTAGGATTCCCTGTTAATCTTACCCGTAATACAAACGGCACCGATGACGGTGGTGACCGGAAAATAACTAGTGAAGTCGATTTCTTCTCCGATAGAAATAAGCCATCATCTTCAGCTTCACACGACCAACATGTTAAATCCAACATCGTCAAAAAAGAGATTATTTCAACCGATGAAAAGCACGTTAATACTGGTTTACAACTTGCAAACACCGGGAGTGATCAATCTGTAGTAGATGATGGTGTTTCATCCGATGCTGAAAATAAACGTGCCAAGACTACTGAGCTTGCACAATTGCAAGTGGAGCTTCAAAGGATGAATTCAGAGAACAAAAAGCTTAAAGAAATGCTTAATCATGTTACCGGTAATTACACGGCTTTACAGATGCAACTTGTGGCATTAATGCAAAAGAATCACCACACTGAAAATGAGGTTGTTAATGCAAAAGCTGAGGACAAAAATAATCAAGGTGTTAGTGGAGGAATGGTACCAAGACAATTTCTTGCGATAACTAATGGAACAAAAGAAGTTGATGAACAAGTATCAAATTCTTCATCTGATGAAAGAACAAGATCAAACACACCTATGAATAATCATATTGAAGGTGGAACAAGAGATCATATAAGAAATAACAATGGCAAAATTGGTAGAGAAGATAGTCCAGAATCAGAAACACAAGGTTGGGGTCCTAATAAGGCTCAAAAAATATTGAACTCTTCCAATGTTACCGATCAAGCAAATACCGAAGCTACAATGAGAAAAGCTCGTGTCTCCGTTCGTGCTAGATCGGAAGCTTCAATGATTAGCGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCGAAAGGAAATCCATGTCCTCGCGCATATTATAGATGCACTATGGCAGTTGGTTGTCCCGTTCGCAAACAAGTTCAACGTTGTGCAGAGGACAAAACAATTTTAGTAACAACATATGAAGGAACACATAATCATCCATTACCACCAGCAGCAATGGCAATGGCATCAACAACATCAGCAGCAGCAAGTATGTTACTATCAGGATCAATGTCAAGTGCAGATGGAATAATGACACCAAATTTATTAGCAAGAGCTATTCTTCCTTGTTCAACAAGTATGGCAACACTTTCAGCTTCAGCACCATTTCCAACAGTTACATTAGATCTTACACAAAACTCAAATCCAAATCCAAATCCATTGCAATTTCAAAGACCTCATCATTCACCATTTCAAGTACCTAATTTTTTTCAAGGACAACAACAATCTCAGAATTTTGCACAAGCAGCTGCATCACTTTATAATCAATCTAAATTCTCTGGTCTTCAATTGTCTCAAGAAATTGGTTCTTCTCATTTAACTGCACAAGCTCCAACACAACAACAACAACAACAGCCTTCTTTGGCCGACTCGGTTAGCGCTGCTACAGCTGCAATCACCGCCGATCCAAATTTCACGGCCGTTCTCGCCGCCGCTATTTCATCCATTATTGGGGGTGGTCATGGAAACAATAACAATGCCAACCCCAACAATAGTAGTAGAAGTACTATTAGCAACTTTTCTGGAAACTAA	1701	0.3862	MDKGWGLALDTSSSSSPIPISSLNSFSRHNNNDNNNNNRMFPILGFPVNLTRNTNGTDDGGDRKITSEVDFFSDRNKPSSSASHDQHVKSNIVKKEIISTDEKHVNTGLQLANTGSDQSVVDDGVSSDAENKRAKTTELAQLQVELQRMNSENKKLKEMLNHVTGNYTALQMQLVALMQKNHHTENEVVNAKAEDKNNQGVSGGMVPRQFLAITNGTKEVDEQVSNSSSDERTRSNTPMNNHIEGGTRDHIRNNNGKIGREDSPESETQGWGPNKAQKILNSSNVTDQANTEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMSSADGIMTPNLLARAILPCSTSMATLSASAPFPTVTLDLTQNSNPNPNPLQFQRPHHSPFQVPNFFQGQQQSQNFAQAAASLYNQSKFSGLQLSQEIGSSHLTAQAPTQQQQQQPSLADSVSAATAAITADPNFTAVLAAAISSIIGGGHGNNNNANPNNSSRSTISNFSGN	566

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g01075	566	Coils	Coil	132	166	-	-
	Trre4g01075	566	MobiDBLite	consensus disorder prediction	214	277	-	-
	Trre4g01075	566	MobiDBLite	consensus disorder prediction	435	456	-	-
	Trre4g01075	566	SUPERFAMILY	WRKY DNA-binding domain	304	372	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre4g01075	566	ProSiteProfiles	WRKY domain profile.	306	372	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre4g01075	566	Gene3D	WRKY domain	296	373	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre4g01075	566	Pfam	WRKY DNA -binding domain	313	370	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre4g01075	566	Coils	Coil	174	194	-	-
	Trre4g01075	566	SMART	WRKY_cls	311	371	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre4g01075	566	MobiDBLite	consensus disorder prediction	1	22	-	-
	Trre4g01075	566	MobiDBLite	consensus disorder prediction	543	566	-	-
	Trre4g01075	566	FunFam	probable WRKY transcription factor 31	296	373	-	-
	Trre4g01075	566	MobiDBLite	consensus disorder prediction	245	264	-	-
	Trre4g01075	566	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	107	553	IPR044810	GO:0003700
	Trre4g01075	566	MobiDBLite	consensus disorder prediction	8	22	-	-
	Trre4g01075	566	MobiDBLite	consensus disorder prediction	216	243	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g01075	Trre-Chr4	8262811	8265581	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g01075	1	549	WRKY Transcription Factor Family	AT1G62300	50.167	6.60e-152	446

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Trre4g01075		WRKY	5.9e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g01075	-		-	gmx:100802124	697.197