Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01074 ATGTCTGATCTTTATTCTTCCATCTATGAGTTCTACAAGCAACACCATCAACTATCTTCATCATCAAGAGGTGCTAGAAGATCATCTTCAACAACAAGAACTTTTCAATGTCCTTTCTGTCATAGAAAGTTCAACACTGCTCCAGCTCTTGGTGGTCACCAAAATGCTCAAAAACTTGAAAGAGCTTATGCAAGAACTAGAACCATTAACCACAATAACAATGGTTCCTTTCATCATCAACATCACCATGTTCCAACAAACACTTTTCCTATGGTTCCTTTCAATTGTTCTGCTTCATACTCTTCCACTCATCCTGATCAACATGTTTTCTACAACAATGTTGCTGCTGCTTCTCCAACTCATGATCAACATGTTGATGCTTCTGACCATGTCAATCTTGACCTCACACTTCACTTGTGA 420 0.3857 MSDLYSSIYEFYKQHHQLSSSSRGARRSSSTTRTFQCPFCHRKFNTAPALGGHQNAQKLERAYARTRTINHNNNGSFHHQHHHVPTNTFPMVPFNCSASYSSTHPDQHVFYNNVAAASPTHDQHVDASDHVNLDLTLHL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01074 139 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Trre4g01074 139 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 99 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01074 Trre-Chr4 8257001 8257420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01074 27 67 C2H2 Transcription Factor Family AT5G01860 51.220 8.10e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01074 - - mtr:11440030 108.227