Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01052 ATGTCTTCATCATCATCCTCTTCTCTTACTAGCGGAGTTGTTGATAATAACCCTTCATACCTATCTGAAGTGCGAACTGTTCACCACCGTTTTAATTCTGGTCATCCAGATGTAAATTTTAAACCACCTGCAGTGAGACCTTATGTTCGATCAAAAATGCCTCGGCTTCGATGGACACCAGATCTTCACCGTTGCTTTGCGCATGCAGTTGAAATGCTTGGAGGAGAAGAAAGGGCTACACCAAAGTTAATTTTACAACTAATGAATGTAAGGGGAATTACTATATCTCATGTCAAAAGCCACCTCCAGATGTATAGGAGCATGAAACAGGAGCTGATGATTCAAGAAGCAAAGAAGAATGATATGGCAGCAGGTTTATTAGCTTCAACAAACTCCTCCTCTGCCCTTGTTCCAAGCTGCCAACATAGTCCTGGCCAAACACAGAATGCTTATCAAGTGAATCAATCGGTTATTATTTGTAACGGTGATGACCAGAAGATGCACACATACATCATCTTTGAGGGTATTCTCGGAAGCCAGACTGTCCAAGTAATTTCTCAATCTCTATTTTATTTTACATAA 582 0.4055 MSSSSSSSLTSGVVDNNPSYLSEVRTVHHRFNSGHPDVNFKPPAVRPYVRSKMPRLRWTPDLHRCFAHAVEMLGGEERATPKLILQLMNVRGITISHVKSHLQMYRSMKQELMIQEAKKNDMAAGLLASTNSSSALVPSCQHSPGQTQNAYQVNQSVIICNGDDQKMHTYIIFEGILGSQTVQVISQSLFYFT 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01052 193 FunFam Myb family transcription factor 52 110 - -
Trre4g01052 193 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 108 IPR006447 GO:0003677
Trre4g01052 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 110 IPR017930 -
Trre4g01052 193 SUPERFAMILY Homeodomain-like 52 110 IPR009057 -
Trre4g01052 193 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 32 152 IPR046955 GO:0003700
Trre4g01052 193 Gene3D - 53 110 - -
Trre4g01052 193 Pfam Myb-like DNA-binding domain 56 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01052 Trre-Chr4 8141083 8143749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01052 44 113 G2-like Transcription Factor Family AT1G14600 67.143 2.93e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre4g01052 Myb_DNA-binding 4.4e-07 CL0123