Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01051 ATGAAGAGTAAAATTGAAAGTAGCACTCTCAAAGAATCCTCAACTCAAACCATGTCTTCATCATCATCCTCTTCTCTTACTAGCGGAGTTGTTGATAATAACCCTTCATACCTATCTGAAGTGCGAACTGTTCACCACCGTTTTAATTCTGGTCATCCAGATGTAAATTTTAAACCACCTGCAGTGAGACCTTATGTTCGATCAAAAATGCCTCGGCTTCGATGGACACCAGATCTTCACCGTTGCTTTGCGCATGCAGTTGAAATGCTTGGAGGAGAAGAAAGGGCTACACCAAAGTTAATTTTACAACTAATGAATGTAAGGGGAATTACTATATCTCATGTCAAAAGCCACCTCCAGATGTATAGGAGCATGAAACAGGAGCTGATGATTCAAGAAGCAAAGAAGAATGATATGGCAGCAGGTTTATTAGCTTCAACAAACTCCTCCTCTGCCCTTGTTCCAAGCTGCCAACATAGTCCTGGCCAAACACAGAATGCTTATCAAGTGAATCAATCGGTTATTATTTGTAACGGTGATGACCAGAAGATGCACACATACATCATCTTTGAGGGTATTCTCGGAAGCCAGACTGTCCAAGTAATTTCTCAATCTCTATTTTATTTTACATAA 633 0.4013 MKSKIESSTLKESSTQTMSSSSSSSLTSGVVDNNPSYLSEVRTVHHRFNSGHPDVNFKPPAVRPYVRSKMPRLRWTPDLHRCFAHAVEMLGGEERATPKLILQLMNVRGITISHVKSHLQMYRSMKQELMIQEAKKNDMAAGLLASTNSSSALVPSCQHSPGQTQNAYQVNQSVIICNGDDQKMHTYIIFEGILGSQTVQVISQSLFYFT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01051 210 MobiDBLite consensus disorder prediction 1 31 - -
Trre4g01051 210 Gene3D - 70 127 - -
Trre4g01051 210 MobiDBLite consensus disorder prediction 8 31 - -
Trre4g01051 210 SUPERFAMILY Homeodomain-like 69 127 IPR009057 -
Trre4g01051 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 127 IPR017930 -
Trre4g01051 210 NCBIfam myb-like DNA-binding domain, SHAQKYF class 71 125 IPR006447 GO:0003677
Trre4g01051 210 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 22 169 IPR046955 GO:0003700
Trre4g01051 210 FunFam Myb family transcription factor 69 127 - -
Trre4g01051 210 Pfam Myb-like DNA-binding domain 73 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01051 Trre-Chr4 8141032 8143749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01051 61 130 G2-like Transcription Factor Family AT1G14600 67.143 2.42e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre4g01051 Myb_DNA-binding 5.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01051 - - gmx:100798980 212.616