Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01041 ATGAATGCTATGTTTTTCTTCTACAGCATGGATCAAAAGGAGCAAGAGCAGTCAAAGGAACAAGAGAACCATGCTCCAACAGGAACACAAGGAAATGGATCAAACCAGATAGGGCCACTATCTCACCCTCTAATTCACAGTGCAGCTGGCTTTTCACCCTATCTGAGCAGAGATCACTTCCAACATTTTTCTCACAACTTTTTTCACCAACAAGATTTGCAGACAAAACTCGCCACTTTCTGGGCGAAACAAAGCCAAGAAATTGAGGAGACCGTTGATTTCAAAAATAATCCCATTCCTTTACTGAGGATTAAGAAGATCATGAAAGCGGACGAGGGAGTGAATAAGGTATCAGCTGAAGCACTTCCTCTACTTGCTAAGGCATGTGAGATGTTTATTATGGAGCTAACATTAAGGTCTTGGACTAATGCTGAATTTAACAAAAGAAGAACACTTCAAAAGAGTGACATTGCAGCTGCAATATCAAGTACTGATGTATTTGATTTCCTTGTTGATATTGCTCCAAGTGAAGACACAAAGGAACATGACATATTTAAGGATATACCAAAAAGAGAGTGTGTTCCTATGCAACCTCAGTATTGTTATGTGCCTGGTGTTCCTATGCAACCTCAGTATTGTTATGTGCCTGGTGTTCCTATGCAACCTCAGTATTGTTATGTGCCTGGTGTTCCTATGCAACCTCAGCATGTTCCTATGCAACCTCAATATGCTGCAGGTCCATCCTATGGTCCTCCAGGAATGCTTATGGGAGGACATGTTCTCAATCAACCTTATTACAACATGCAGATACCTCATCCTTTTGCAAATCCAATGTTTCCAATTCCAAAACAGGAAGAGGAAAATGATGATTCTACTGATGTGCCTGATTCAGAGAATTAA 900 0.4056 MNAMFFFYSMDQKEQEQSKEQENHAPTGTQGNGSNQIGPLSHPLIHSAAGFSPYLSRDHFQHFSHNFFHQQDLQTKLATFWAKQSQEIEETVDFKNNPIPLLRIKKIMKADEGVNKVSAEALPLLAKACEMFIMELTLRSWTNAEFNKRRTLQKSDIAAAISSTDVFDFLVDIAPSEDTKEHDIFKDIPKRECVPMQPQYCYVPGVPMQPQYCYVPGVPMQPQYCYVPGVPMQPQHVPMQPQYAAGPSYGPPGMLMGGHVLNQPYYNMQIPHPFANPMFPIPKQEEENDDSTDVPDSEN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01041 299 Gene3D Histone, subunit A 60 176 IPR009072 GO:0046982
Trre4g01041 299 MobiDBLite consensus disorder prediction 12 39 - -
Trre4g01041 299 FunFam Nuclear transcription factor Y subunit gamma 65 176 - -
Trre4g01041 299 SUPERFAMILY Histone-fold 53 170 IPR009072 GO:0046982
Trre4g01041 299 MobiDBLite consensus disorder prediction 22 39 - -
Trre4g01041 299 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 48 187 - -
Trre4g01041 299 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 99 161 IPR003958 -
Trre4g01041 299 MobiDBLite consensus disorder prediction 279 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01041 Trre-Chr4 8030184 8031083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01041 77 184 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.519 2.56e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre4g01041 CBFD_NFYB_HMF 5e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01041 K08066 - vvi:100266507 184.882