Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01038 ATGTCTTGCTCCAATGTAACCATGTTGGTCTCTTCCAAACCTTCATTACCTGATGCATCTAACCTCTCTTTTCGTTCAGCTTTCAACCCTTTTCAGCTTCCTTCACAAAACTCATCATGTTCTTCAACTCCTTCAAGACCTACCTCAATTCAATGTGGACTAAGAGAACTCAGAACTCGTATCGATTCTGTCAAAAACACTCAGAAAATCACCGAAGCAATGAAACTTGTCGCTGCTGCAAAAGTCAGAAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCACAGACACTTGTTGAAGTTCTTTACAGTATCAATGAACAGCTTCAAACCGAAGATGTCGATGCGCCTCTTACTAAGCTTAGACCGGTTAAGAAAGTTGCTCTTGTTGTTTGCACAGGTGATAGAGGTCTTTGTGGTGGATTCAATAATCAAATTATTAAAAAAGCTGAAGCTAGAATTGCTGAGTTAAAAAATCTTGGTGTTGATTACACTATTATAAGTGTTGGTAAAAAGGGTAACACTTATTTCTTACGTAGGCCTTATATACCGGTTGATCGGTATCTTGAAGGTGGAAATCTTCCTACTGCTAAAGATGCACAAACAATTGCTGATGATGTTTTTTCACTTTTTGTTAGTGAAGAAGTTGATAAAGTTGAACTTTTGTATACAAAATTTGTTTCATTAGTGAAATCAGATCCTATAATTCATACTTTGTTACCACTTTCGCCGAAAGGTGAAATATGTGATATTAATGGAAACTGTGTTGATGCTGCTGAAGATGAGCTTTTCAGGTTAACAACAAAAGAAGGAAAGTTAACTGTTGAAAGAGATGCTATAAGATCTAAGACGATTGATTTTTCGCCTATTTTGCAGTTTGAGCAAGATCCTGTTCAAATTCTTGATGCACTTTTGCCACTTTATTTGAACAGTCAAATATTGAGAGCATTGCAGGAATCACTTGCTAGTGAATTAGCTGCTAGAATGAGTGCTATGAGTAGTGCTTGTGATAATGCTGTTGAGTTGAAGAAGAATTTGTCAAGGGTTTATAATAGGGAACGTCAAGCGAAGATTACCGGTGAAATTCTCGAAATTGTTGCTGGTGCTGATGCATTAGTTTAG 1125 0.3707 MSCSNVTMLVSSKPSLPDASNLSFRSAFNPFQLPSQNSSCSSTPSRPTSIQCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSQTLVEVLYSINEQLQTEDVDAPLTKLRPVKKVALVVCTGDRGLCGGFNNQIIKKAEARIAELKNLGVDYTIISVGKKGNTYFLRRPYIPVDRYLEGGNLPTAKDAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPIIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDAIRSKTIDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSACDNAVELKKNLSRVYNRERQAKITGEILEIVAGADALV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01038 374 ProSitePatterns ATP synthase gamma subunit signature. 359 372 IPR023632 -
Trre4g01038 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 53 120 - -
Trre4g01038 374 FunFam ATP synthase gamma chain, chloroplastic 121 244 - -
Trre4g01038 374 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 53 373 IPR035968 GO:0015986|GO:0045261|GO:0046933
Trre4g01038 374 FunFam ATP synthase gamma chain, chloroplastic 270 373 - -
Trre4g01038 374 FunFam ATP synthase gamma chain, chloroplastic 52 119 - -
Trre4g01038 374 CDD F1-ATPase_gamma 54 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre4g01038 374 PRINTS ATP synthase gamma subunit signature 320 339 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre4g01038 374 PRINTS ATP synthase gamma subunit signature 351 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre4g01038 374 PRINTS ATP synthase gamma subunit signature 218 235 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre4g01038 374 PRINTS ATP synthase gamma subunit signature 125 144 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre4g01038 374 PANTHER ATP SYNTHASE GAMMA CHAIN 5 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre4g01038 374 NCBIfam ATP synthase F1 subunit gamma 53 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre4g01038 374 Gene3D - 121 244 - -
Trre4g01038 374 Hamap ATP synthase gamma chain [atpG]. 51 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre4g01038 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 275 373 - -
Trre4g01038 374 Pfam ATP synthase 54 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01038 Trre-Chr4 8011550 8012674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01038 28 373 Primary Pumps ATPases AT1G15700 70.029 2.64e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01038 K02115 - gmx:100797290 621.313