Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01036 ATGATTAGTTGTGAGGAGGATGAGGTGAAGAGAACACTGATACAGTTCCTGACACAACTCAAAGGCCAGCAGAACAATAATTCCACTTTGCTTTGGAAACCAGACACTGATCCTTGCAAAGATCAGTGGAATGGTGTAATCTGTGATGCTCAAATGTCTATAAAGAGGTTGGATCTTTACAGGTTCAATTTGTCCGGAACCCTTGATGTTGCCTTGCTTTGCAATTCGCAGCCTCTAGCTGCATCGCTCACCTTTCTTAGTCTTGATGACAACAACATCAGTGGTGGAATAGCATCCGAGATTGGAAATTGCAAACAACTCACTCGCCTTCACTTAAGCGGAAACCAACTTGCTGGAAACCTTCCTACTTCGCTTGCCACGTTAAACAATTTGAAAAGACTAGACCTTTCGAACAACAAGTTTTCGGGACCGTTGCCAAACCTGGATAGAATCTCAGGCCTCAATATGTTCCTAGCACAAAACAATGACCTCAGTGGAAATATACCAGCATTTTATTTCTCTAATTTTGACCATTTCAATGTTTCTTTTAACAATTTCAGTGGCCTAATTCCAGACGTGCAAGGTTATTTCACTGCCGACAGTTTTCTCGGTAATCCAGGACTATGCGGATATCCACTGCAGAAAAATTGTTCTAGTCAGATTCTGCGGAGTACTTCCAGTAAGATATCAGAAGACGAATCAAAGGGTCCTTCTAAAGAGCAGATGCTTATCTATTCAGGCTATGCTGCATTAGGTGTTATCATAATCCTTATTGTAGTCTTGAAGATATGTAGCGGAAAGAAACAAGGAAAGAAAATTGAAGCAGAATCAAACGGTGATATCGAAAAAACAAGCTATATTTCAAGTGAATCCAAAGCAGAAGAGGCAAGCAAATCAGGATTTTCAGTTTCATCTGAAAATGGAATGGTCTCACAACAATCACTTATTGTTCTTGCAAGGCCAATGGTGAATGAATTGAAAATGGAGGACTTGTTAAGAGCACCTGCTGAAATGATTGGTAGAGGGAAGAATGGAAGTCTTTATAAGGTGATGCTAACCAATGGAATAGTAGTTGTTGTGAAAAGGATTAAGGATTGGAGTATTTCTAGTGTTGAATTCAAGCAAAGAATGCAACTATTGAATCAAGCTAAGCATCCTCATGTTCTATCACCTCTTGCATTCTATTGTACCAAACAAGAGAAACTTTTGGTCTATGAATATCAGCAAAATGGAAGTTTGTTCAAGCTTCTACATGGTAAATCAAAAACATTTGATTGGACCAGCAGACTTGGAATTGCATCTACAATTGCAGAAGCATTAGCTTTCATGCATCAAGAGTTAGGCCAACATGGTATTATTCATGGTAACATGAAATCATCAAACATTTTGCTAAACAATAACATGGAGCCTTTTATAAGTGAATATGGTACTATGCCTAAGGATGATCAACAAAGTTCAACTTTTGCAACACCTATTGCTAATGATGCATTCAAAGGAGATGTTTATGGCTTTGGAGTTATTCTTCTTGAACTTCTTACTGGAAAATTGGTGAAGAATGATGGTATTGACTTAACTGATTGGGTTCAATCAGTTGTAAGGGAAGAATGGACAGGTGAAGTGTTTGATAGGTCATTATTGAAAGAGTATGCAAGTGAAGAGAGGATGGTTAATATGCTTCAAGTGGCTATAAGATGTGTTAATAGATCCTTAGAAGCTAGGCCAAGTATGAATCAAGTGGTTCTTATGATTAACACTATCAAAGATGAAGAGGAAAAATCATTGATTTACCAAGTTTGA 1797 0.3806 MISCEEDEVKRTLIQFLTQLKGQQNNNSTLLWKPDTDPCKDQWNGVICDAQMSIKRLDLYRFNLSGTLDVALLCNSQPLAASLTFLSLDDNNISGGIASEIGNCKQLTRLHLSGNQLAGNLPTSLATLNNLKRLDLSNNKFSGPLPNLDRISGLNMFLAQNNDLSGNIPAFYFSNFDHFNVSFNNFSGLIPDVQGYFTADSFLGNPGLCGYPLQKNCSSQILRSTSSKISEDESKGPSKEQMLIYSGYAALGVIIILIVVLKICSGKKQGKKIEAESNGDIEKTSYISSESKAEEASKSGFSVSSENGMVSQQSLIVLARPMVNELKMEDLLRAPAEMIGRGKNGSLYKVMLTNGIVVVVKRIKDWSISSVEFKQRMQLLNQAKHPHVLSPLAFYCTKQEKLLVYEYQQNGSLFKLLHGKSKTFDWTSRLGIASTIAEALAFMHQELGQHGIIHGNMKSSNILLNNNMEPFISEYGTMPKDDQQSSTFATPIANDAFKGDVYGFGVILLELLTGKLVKNDGIDLTDWVQSVVREEWTGEVFDRSLLKEYASEERMVNMLQVAIRCVNRSLEARPSMNQVVLMINTIKDEEEKSLIYQV 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01036 598 Gene3D Ribonuclease Inhibitor 8 74 IPR032675 -
Trre4g01036 598 Gene3D Ribonuclease Inhibitor 75 150 IPR032675 -
Trre4g01036 598 Gene3D Transferase(Phosphotransferase) domain 1 409 597 - -
Trre4g01036 598 SUPERFAMILY Protein kinase-like (PK-like) 337 583 IPR011009 -
Trre4g01036 598 PANTHER OS05G0588300 PROTEIN 10 588 - -
Trre4g01036 598 Pfam Leucine rich repeat N-terminal domain 11 49 IPR013210 -
Trre4g01036 598 Pfam Protein kinase domain 337 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01036 598 SUPERFAMILY L domain-like 30 213 - -
Trre4g01036 598 ProSiteProfiles Protein kinase domain profile. 333 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01036 598 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Trre4g01036 598 Gene3D Ribonuclease Inhibitor 151 220 IPR032675 -
Trre4g01036 598 FunFam Leucine-rich repeat receptor protein kinase EMS1 73 171 - -
Trre4g01036 598 ProSiteProfiles Leucine-rich repeat profile. 130 152 IPR001611 GO:0005515
Trre4g01036 598 Gene3D Phosphorylase Kinase; domain 1 301 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01036 Trre-Chr4 7994534 7996808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01036 32 587 Receptor kinase-like Gene Family AT1G68400 36.585 1.95e-91 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre4g01036 Pkinase 3.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01036 - - psat:127078038 990.719