Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01035 ATGTCGACGGTGTACGTTTTGGAACCTCCGACAAAGGGAAAGGTAGTCGTCAATACAACACGCGGCCCTATCGACATTGAGCTATGGCCTAAAGAAGCTCCCAAAGCCGTTAGAAACTTCGTTCAACTCTGTCTCGAAGGTTACTACGACAACACAATCTTCCACCGTATTCTCAAAGACTTTCTCGTTCAGTGTGGTGATCCCACCGGCACCGGCACTGGAGGTGAAAGTATTTATGGAGATGTTTTTGCTGATGAGTTTCATTCGCGTATTAAATTCAAGCATAGAGGTTTGGTTGCAATGGCGAATTCTGGAACACCTAATTCTAATGGAAGTCAGTTTTTTATTACTCTTGATCGTTGTGATTGGCTTGATCGAAAACATACCATTTTCGGAAAGGTGACAGGAGATACAATGTATAATCTGTTGAGACTTGGTGAAGTTGAGACAGATAAGAATGACCGGCCATTGGATCCAGCTCCGAAGATATTGTCAGTTGAGGTGTTGTGGAACCCATTTGAAGACATTGTTCCAAGAACACTTCAGAAACCTCAGACTAAAGCTACAAATGATACAGATGGTAAAGATGTAAAGAGGAAAGGTGTAAAAAATAAGAACTTGCTTTCATTTGGGGAAGAAACTGAAGAAGAGGAAAAAGAATTGACATTGGTGAAGAAAAAGATTGTGAGCAGTCATGATGTCTTGAATGATCCTCGTCTTCTAAAGGACGAAAATGCTAATAATGAATTGACTTCATCTGAAAGTAAATTAAAAAGGGATATGCAATTATCTGTAAGGGATGCACTTAACACAAAAAAAGAAGAGCCTCAGAAAGATTCAGGAGCTGGTAAATTGGCTCATCTTGATTCCAGTGATGACGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAAATACTCAAAAAACGGAAGGAACTGGATGATCTCCCGCCCAAACCAAAGTTGCAAACTGGAAGGTCCAGGACCAGGTCCAGTCCAGAGAACCATACTGTGTCAAGAGCTAGGTCCAATTCTTTAAGTGCCGATGAGGATCAACCACGAGTGGAAAAACTGTCCATGAAGAAAAAGGGAATAGGATCCGAAGCAAGAGCTGAACGAATGGCTAATGCAGACACAGATATGCAGCTTTTGAATGAAGCGGAGAGAGGAAGACATTTGCAGAAGCAGAAGAAACGCAGACTTCAAGGGCGTGAAGATGAAGTTCTGGCAAAACTTGAAAAATTTAAAGCCAAGGAGACACCCACAACTGTTGAATCTAAACATGTCAGTGATGAGGTATCTGACTGGAGAAGTGGTGGCTTAAAATTCTCCCCCGCAGTTGGCAAGGACCGCATGTCTCGCACTGAGGATCCAAATGATTATGTTGTGCTTGACCCTCTTTTGGAGAAGGGGAAAGAGAAGTTCAATAAGATGCAAGCCAAACAAAAGAGACGAGAACGAGAATGGGCTGGGAGATCTCTTACCTGA 1488 0.4234 MSTVYVLEPPTKGKVVVNTTRGPIDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRILKDFLVQCGDPTGTGTGGESIYGDVFADEFHSRIKFKHRGLVAMANSGTPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPAPKILSVEVLWNPFEDIVPRTLQKPQTKATNDTDGKDVKRKGVKNKNLLSFGEETEEEEKELTLVKKKIVSSHDVLNDPRLLKDENANNELTSSESKLKRDMQLSVRDALNTKKEEPQKDSGAGKLAHLDSSDDDEADFDSRMRMQILKKRKELDDLPPKPKLQTGRSRTRSSPENHTVSRARSNSLSADEDQPRVEKLSMKKKGIGSEARAERMANADTDMQLLNEAERGRHLQKQKKRRLQGREDEVLAKLEKFKAKETPTTVESKHVSDEVSDWRSGGLKFSPAVGKDRMSRTEDPNDYVVLDPLLEKGKEKFNKMQAKQKRREREWAGRSLT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01035 495 MobiDBLite consensus disorder prediction 324 346 - -
Trre4g01035 495 MobiDBLite consensus disorder prediction 180 200 - -
Trre4g01035 495 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 180 - -
Trre4g01035 495 MobiDBLite consensus disorder prediction 419 435 - -
Trre4g01035 495 MobiDBLite consensus disorder prediction 347 375 - -
Trre4g01035 495 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Trre4g01035 495 MobiDBLite consensus disorder prediction 419 457 - -
Trre4g01035 495 MobiDBLite consensus disorder prediction 253 321 - -
Trre4g01035 495 Coils Coil 398 418 - -
Trre4g01035 495 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Trre4g01035 495 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Trre4g01035 495 MobiDBLite consensus disorder prediction 472 495 - -
Trre4g01035 495 MobiDBLite consensus disorder prediction 239 405 - -
Trre4g01035 495 Gene3D - 2 183 IPR029000 -
Trre4g01035 495 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 219 IPR044666 -
Trre4g01035 495 CDD cyclophilin_CeCYP16-like 8 180 - -
Trre4g01035 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Trre4g01035 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Trre4g01035 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Trre4g01035 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Trre4g01035 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01035 Trre-Chr4 7986699 7993521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01035 9 173 U-box Gene Family AT5G67530 46.667 3.65e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01035 K12737 - gmx:100793148 772.311