Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01029 ATGGTTTTCAACGATAGTGCTACCTCCAACACCAAATTCGATGCCATTGCTGATATACATCCTGGCAAAGAGAATATTCGCATCAATGTTAGGGTGCTTCGTTTGTGGAAGGTCCCTACTTTCCTGAATCCATCTGAGAATGGTTCAATGGAAATGGTTTTGGTTGATGATCAGGGTGGGAAAATTCATGCTTCTGTTAAATTGTCTGAGGGGTCGTCCATAGATTCTTATGGTTTGAGTTTGACCGATATTTCTGATGTGTGTGCTCATACCCATGATTATGAGTTCTTAGTTGATGTAATTGGTTATTTGACTGGTCTATCTGCTGAAAGGGAGTATATTCGTGACGGGAAGATAACTAAGATGGTCGTTGCTGAATTAACAGATCACAGTGGCAAGTGTGAAATAGCTTTATTTGGAGATTATGCTGTTGATTTGACAAAGAAGATTGATAAGTCCTCTGGTGGTTTGCCTATTGTTGTTGTACAATTTGCTAAAGTGAAAATATTTAGAGACAAAGCTTCTCTTCAAAATGTTAAGAATACCACTAGGATTTTCGTTAATCCAGATATTGCTGAGGTTGAAACCTTCAAAAACAGTCTTGCTGTTCACGGTTTTGAAGCTGAGACCAGTGTTCTTTTAATTGGTGGACCTCCTAAACCTTCTTTTGAAGAAGAATTTCTTCAGCTGCACCCGAAAATGAATGTTTCACAGCTTGATGGTTTGGATGAAGGTGGTGTGTCTGTTGTTTGTGCTGAGGTGGTTCGTTTTGTTGATGATAGTGACTGGTGGTATCCTGCTTGCAAGTGTCATAGGAGTGTTGTGGCTGACTCTGGATCATATTTTTGTAGCTCATGCGATAGGCATGTTTTTCAAGTTGTTCCAAGGTTTCGTGTGAAAGTTGAGGTTACTGATGGTACTTCTTTTGCCATCTTTTTAATCTTTGATTCGGAGATGGCTTACATAATGGAGAAATCATGTGCCTATTTTGTTGCTCAATCTAAGGTCTGCAATGGTGTTTCGCACCCAAATGAGTTTGATGGAATTGTTGGAAAGAAGATGCTGTTTTGTGTTCAGAAATCTCCTCGACTTGGACTTGCTATATCTTCGTACAGGGTTAAAAGAATATGTATGGATGCTGTTTTAATTGATAAATTCTGTACTCAAGATTCATGTTCTAAATCTTCCGAGGCAATCGGAGGTGTTGTTGATTTGGATTCTGATGGAGTTGGTGATGAAACTGATGTTGTTCTTGACTCAAAGTCTCTGGAGTTCCTAGACAATGTAATTGTTACGCCTGTTGAAGCTTGTGATAGATCTATTGTGGAAGATGAGGCTGAAGGCTCTTTAAAGGCCATTGAAGTCCGCGACAATGCAGTTCTTGCACCCCTTGAGGTTCCCCATAATTTACTTGGAGAAGATGATGCTGAAGGTTCTACTAAGAGGAATTTGTCCAAGTCATGTAGTTCTGCTCCCAAACGTCAATCAAACAAGCGTCTCAAACCTGTTAAGACTGAGAAAGAGTGA 1527 0.3982 MVFNDSATSNTKFDAIADIHPGKENIRINVRVLRLWKVPTFLNPSENGSMEMVLVDDQGGKIHASVKLSEGSSIDSYGLSLTDISDVCAHTHDYEFLVDVIGYLTGLSAEREYIRDGKITKMVVAELTDHSGKCEIALFGDYAVDLTKKIDKSSGGLPIVVVQFAKVKIFRDKASLQNVKNTTRIFVNPDIAEVETFKNSLAVHGFEAETSVLLIGGPPKPSFEEEFLQLHPKMNVSQLDGLDEGGVSVVCAEVVRFVDDSDWWYPACKCHRSVVADSGSYFCSSCDRHVFQVVPRFRVKVEVTDGTSFAIFLIFDSEMAYIMEKSCAYFVAQSKVCNGVSHPNEFDGIVGKKMLFCVQKSPRLGLAISSYRVKRICMDAVLIDKFCTQDSCSKSSEAIGGVVDLDSDGVGDETDVVLDSKSLEFLDNVIVTPVEACDRSIVEDEAEGSLKAIEVRDNAVLAPLEVPHNLLGEDDAEGSTKRNLSKSCSSAPKRQSNKRLKPVKTEKE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01029 508 MobiDBLite consensus disorder prediction 482 496 - -
Trre4g01029 508 SUPERFAMILY Nucleic acid-binding proteins 12 66 IPR012340 -
Trre4g01029 508 MobiDBLite consensus disorder prediction 470 508 - -
Trre4g01029 508 SUPERFAMILY Nucleic acid-binding proteins 79 206 IPR012340 -
Trre4g01029 508 CDD RPA1_DBD_B_like 99 201 - -
Trre4g01029 508 Gene3D - 223 380 IPR012340 -
Trre4g01029 508 Pfam Replication factor-A C terminal domain 254 346 IPR013955 -
Trre4g01029 508 Gene3D - 76 211 IPR012340 -
Trre4g01029 508 PANTHER OS03G0429900 PROTEIN 15 360 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre4g01029 508 SUPERFAMILY Nucleic acid-binding proteins 243 362 IPR012340 -
Trre4g01029 508 CDD RPA1_DBD_C 241 356 IPR047192 -
Trre4g01029 508 Gene3D - 11 75 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01029 Trre-Chr4 7917504 7919840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01029 70 331 Core DNA Replication Machinery Family AT4G19130 22.261 4.82e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01029 - - tpra:123904946 501.13