Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01022 ATGATGCAGCCTGGACATGGTATGGCTCCTCCAAACATTGGCCAACAGCCACCGCAACAGTATCAGCAAACGCCGCCACAGCCCTACGTCATGATGCCACCTCAAGCCCCCCAGGCCCTTTGGGCCCAATCCGCTCAGCCTCCTCAGCAGCCTGCCAGCGCCGACGAGGTCCGTACTCTCTGGATCGGCGATTTGCAGTATTGGATGGACGAGAATTATCTCTACACCTGCTTCGGTAACACTGGCGAGGTTACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAGTCAGAAGGTTATGGTTTTATCGAGTTTAATACTCGTGCAACCGCTGAAAAGGTGCTTCAAACATACCAAGGAACAATTATGCCAAATGGTGGCCAGAGTTACAGATTGAATTGGGCAACTTTCAGTGCCGGGGAGAGGTCGTCTAGGCAGGATGATGGTCCTGATCATACCATTTTTGTTGGTGATTTGGCTGCTGATGTTACTGATTACCTTCTTCAGGAAACTTTTAGGGCTCGTTATAACTCGGTGAAGGGTGCAAAGGTTGTTATTGATAGACTCACTGGTAGGTCTAAGGGTTATGGTTTTGTTAGATTTGCTGATGAGGGTGAACAGATGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCAATGAGGATTGGACCAGCCACTAACAAGAACCCTGCTGCTACCACTCAGCCGAAAGCTTCATATTCGAACACTCCAGGTGGACAAAGCGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCAATGACGATCATCTGAGGCAAGTTTTCAGCCAATACGGTGAACTAGTACATGTGAAAATTCCGTCAGGCAAGAGATGTGGGTTTGTCCAATTTTCGGACAGGAGCTGTGCAGAAGAGGCGATAAGAGTTTTAAATGGAACTTTATTAGGTGGACAAAATGTTCGCCTTTCATGGGGACGAACTCCTTCAAACAAACAGCAAGATCCAAACCAGTGGAATGCTGCTGCAGCTGGTGGTGGTGGTGGATACTATGGTTATCCTCAAGGTGGATATGAAAATTATGGTTACGCTGCTGCTCCTCCCGCTGGCCAGGATCCCAACGTGTACGGAAGTTATCCGGGTTATGCTGGTTACCAACACCCACAACAGCAACAGCAGCAAATGGGATATAGCTAA 1209 0.4723 MMQPGHGMAPPNIGQQPPQQYQQTPPQPYVMMPPQAPQALWAQSAQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRATAEKVLQTYQGTIMPNGGQSYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYSNTPGGQSENDPNNTTIFVGNLDPNVNDDHLRQVFSQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQQDPNQWNAAAAGGGGGYYGYPQGGYENYGYAAAPPAGQDPNVYGSYPGYAGYQHPQQQQQQMGYS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01022 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 232 IPR000504 GO:0003723
Trre4g01022 402 MobiDBLite consensus disorder prediction 380 402 - -
Trre4g01022 402 SUPERFAMILY RNA-binding domain, RBD 57 233 IPR035979 GO:0003676
Trre4g01022 402 Gene3D - 152 228 IPR012677 -
Trre4g01022 402 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 49 336 - -
Trre4g01022 402 Gene3D - 10 148 IPR012677 -
Trre4g01022 402 MobiDBLite consensus disorder prediction 388 402 - -
Trre4g01022 402 MobiDBLite consensus disorder prediction 227 259 - -
Trre4g01022 402 CDD RRM2_SECp43_like 152 231 - -
Trre4g01022 402 FunFam Polyadenylate-binding protein RBP45C 238 342 - -
Trre4g01022 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 218 IPR000504 GO:0003723
Trre4g01022 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 325 IPR000504 GO:0003723
Trre4g01022 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 125 IPR000504 GO:0003723
Trre4g01022 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 138 IPR000504 GO:0003723
Trre4g01022 402 Gene3D - 240 368 IPR012677 -
Trre4g01022 402 MobiDBLite consensus disorder prediction 1 33 - -
Trre4g01022 402 FunFam Polyadenylate-binding protein RBP45C 144 237 - -
Trre4g01022 402 SMART rrm1_1 59 134 IPR000504 GO:0003723
Trre4g01022 402 SMART rrm1_1 261 328 IPR000504 GO:0003723
Trre4g01022 402 SMART rrm1_1 154 228 IPR000504 GO:0003723
Trre4g01022 402 FunFam Polyadenylate-binding protein RBP45 10 143 - -
Trre4g01022 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 332 IPR000504 GO:0003723
Trre4g01022 402 CDD RRM1_SECp43_like 59 139 - -
Trre4g01022 402 MobiDBLite consensus disorder prediction 232 259 - -
Trre4g01022 402 SUPERFAMILY RNA-binding domain, RBD 250 361 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01022 Trre-Chr4 7847845 7851606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01022 7 339 Eukaryotic Initiation Factors Gene Family AT1G22760 28.402 1.74e-28 115