Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01010 ATGAGTTGCTTTCCATGCTGCAAATCAGAGGTTGAATCACCTTCATTTAGAGGATGTTCCAAGAAAATTTCCAAAGGAAGAAGAACATTCAAATCATTAGCAGCTGCTATGTCCCTCAAAACAGGCAGCAGCAGGCATAGACAAATTACAGAAGAGATATTAAAATATGGAACTGCAAAAAATGATGTTAAAGTATTCACATATGAAGAATTAGTTGATGCAACAAATAATTTCAGTTCTGATTGTCTTGTGGGAGAAGGTGGATTTGGAAATGTTTATAAAGGATACATGAAAAGCATTGAACAAAATGTAGCCGTGAAGACTCTAAACAGAGAAGGGAATCAAGGAACAAGAGAATTTTTTGCAGAAGTTTTAATGTTAAGTATGGTGAATCATCCAAACCTTGTGAGGCTTATTGGTTATTGTGTAGAAGATGATCAAAGAGTTTTGGTTTATGAGTACATGGCCAATGGAAGTTTGGAAAATCACCTTTTAGATATAGGTAAAGATAAAGAACCATTGGATTGGGAAACAAGGATGAAAATAGCTGATGGAGCAGCTAGAGGACTTGAATATCTGCATAATTCTGCAGATCCACCGGTGATTTTCCGCGATTTTAAATCATCTAATATACTATTAGATGAAAATTTCAATGCAAAGCTTTCTGATTTTGGTCTTGCTAAGATTGCTCCAAAAGATGGTGAGAACTTAGTCACAACTAGAGTTATGGGGACCTATGGCTATTGTTCACCGGAGTATGCTGCTACCGGTAAACTAACCTCGAAGTCGGATATTTATAGTTTTGGTGTTGTGTTCTTGGAAATAATCACCGGTAGAAGAGTAATCGACACTGCAAGAGAACCAGAAGAAAGAAACTTGATTGATTGGGCACAACCAATGTTTAAGGACAGAACAAAGTTCACTCAAATGGCTGACCCTTTGCTTAAAGAACGGTACCCGTCGAAGGGACTATTTCAAGCCCTAGCAGTGGCAGCAATGTGTCTACAAGAGGATTTCGAGACGCGCCCTGACATGGACGATGTCGTAGAGGCTCTTGAACAGATAACAGTACACAAAACTGAAGAAAAAGACATAGTTGGTGAATCTTCAAAAACTACTGGTCATGCTGAATCTTTTAGATCTCAAAATTCAGTTGGATCTGAAAGGGCATAA 1173 0.3802 MSCFPCCKSEVESPSFRGCSKKISKGRRTFKSLAAAMSLKTGSSRHRQITEEILKYGTAKNDVKVFTYEELVDATNNFSSDCLVGEGGFGNVYKGYMKSIEQNVAVKTLNREGNQGTREFFAEVLMLSMVNHPNLVRLIGYCVEDDQRVLVYEYMANGSLENHLLDIGKDKEPLDWETRMKIADGAARGLEYLHNSADPPVIFRDFKSSNILLDENFNAKLSDFGLAKIAPKDGENLVTTRVMGTYGYCSPEYAATGKLTSKSDIYSFGVVFLEIITGRRVIDTAREPEERNLIDWAQPMFKDRTKFTQMADPLLKERYPSKGLFQALAVAAMCLQEDFETRPDMDDVVEALEQITVHKTEEKDIVGESSKTTGHAESFRSQNSVGSERA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01010 390 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Trre4g01010 390 Pfam Protein kinase domain 83 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01010 390 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01010 390 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Trre4g01010 390 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Trre4g01010 390 Gene3D Transferase(Phosphotransferase) domain 1 155 377 - -
Trre4g01010 390 MobiDBLite consensus disorder prediction 371 390 - -
Trre4g01010 390 MobiDBLite consensus disorder prediction 360 390 - -
Trre4g01010 390 Gene3D Phosphorylase Kinase; domain 1 38 154 - -
Trre4g01010 390 CDD STKc_IRAK 84 355 - -
Trre4g01010 390 PANTHER OS07G0668900 PROTEIN 3 364 - -
Trre4g01010 390 SUPERFAMILY Protein kinase-like (PK-like) 61 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01010 Trre-Chr4 7783156 7785824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01010 64 352 Glycoside Hydrolase AT3G07070 61.938 3.01e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre4g01010 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01010 - - mtr:25486126 641.343