Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01004 ATGATCTCTTCAATCAAATGCACAACATCATCATCACTCACCAGTACTTCTACTTTCTCTAGCACAAAACTTCCTATTCCAAGGTCTCAATTTTCAATTCCACCAACTATTCAAAATGTGGAACAAAACATGGATTTCCCTCTACTTTCTTCCAAGAAACCTCTCTACCTTTCATCCATTGATAATTTTGCATTATTGACAAAACCCAAAAGAAAGAATGTGACTAAGTGTCAAGCCTATGAGGCTGATAGATCAAGACCACTAGAGATTAACATTGAGCTTCCTAATAAAGAATCAGCTCAAAAACTTAAAATTGGATTGTATTTTGCTACTTGGTGGGCTTTGAATGTTGTGTTCAACATATATAATAAGAAAGTTTTGAATGTTTTTCCTTATCCTTGGCTTACTTCAACTTTGTCCTTAGCTGCTGGTTCTCTCATGATGTTAATCTCATGGGCCACTAGAATTGCTGATGCCCCAAAAGTTGATTTGGATTTCTTGAAAGCCCTTTTTCCTGTAGCTGTAGCACACACAATTGGGCATGTTGCTGCAACTGTGAGTATGTCTAAAGTAGCAGTTTCATTCACTCACATCATAAAAAGTGGAGAACCAGCTTTCAGTGTTCTAGTATCAACATTCTTGCTAGGAGAAACATTTCCCATGCCAGTTTACCTCTCATTGTTGCCAATAATTGGAGGTTGTGCACTAGCTGCTATAACTGAGCTCAACTTCAACATGATTGGATTTATGGGAGCTATGATATCAAATTTAGCATTTGTATTCAGGAATATATTCTCAAAGAAAGGGATGAATGGAATGAGTGTTAGTGGAATGAACTATTATGCTTGTCTTTCAATGTTGTCTCTATTAATTCTCACACCTTTTGCTATTGCTGTGGAGGGTCCTAAAGTTTGGGCTGCTGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGGTGGGTGATTGCACAAAGTGTGTTCTACCATTTGTACAATCAAGTCTCATACATGTCACTTGATCAGATTTCACCTTTAACATTCAGCATAGGAAACACACTGAAGAGAATTTCTGTAATAGTCGCTTCCATCATTATCTTTCACACACCACTTCAACCTATCAATGCTCTTGGAGCAGCAATTGCAATTCTTGGAACCTTCATCTATTCACAGGCTAAACAGAATTAA 1194 0.3769 MISSIKCTTSSSLTSTSTFSSTKLPIPRSQFSIPPTIQNVEQNMDFPLLSSKKPLYLSSIDNFALLTKPKRKNVTKCQAYEADRSRPLEINIELPNKESAQKLKIGLYFATWWALNVVFNIYNKKVLNVFPYPWLTSTLSLAAGSLMMLISWATRIADAPKVDLDFLKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSTFLLGETFPMPVYLSLLPIIGGCALAAITELNFNMIGFMGAMISNLAFVFRNIFSKKGMNGMSVSGMNYYACLSMLSLLILTPFAIAVEGPKVWAAGWQTAVSQIGPNFVWWVIAQSVFYHLYNQVSYMSLDQISPLTFSIGNTLKRISVIVASIIIFHTPLQPINALGAAIAILGTFIYSQAKQN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01004 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 295 393 - -
Trre4g01004 397 PANTHER SOLUTE CARRIER FAMILY 35 104 395 - -
Trre4g01004 397 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 103 396 IPR004696 GO:0016020|GO:0022857|GO:0055085
Trre4g01004 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
Trre4g01004 397 Pfam Triose-phosphate Transporter family 103 392 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01004 Trre-Chr4 7734139 7736556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01004 16 397 Antiporters AT1G61800 78.385 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01004 K15283 K05350 gmx:100804205 629.017